Basic Information
Gene Model:Bol017978
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000142
Sequence:
 | 
Gene Structure
Nucleotide Length:2442 bp
Transcript Length:1251 bp
Protein Length:416 aa
Strand:-
Location:C01: 3757315 : 3759756
Gene CDSs(6): 1-50 | 134-416 | 502-747 | 882-1280 | 1379-1473 | 2265-2442 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 76 174 1.9e-28IPR003340Transcriptional factor B3
HMMPfamPF02362B3 209 307 5.6e-25IPR003340Transcriptional factor B3
ProfileScanPS50863B3 209 306 11.998IPR003340Transcriptional factor B3
ProfileScanPS50863B3 76 173 15.834IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 97 187 0.00085Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O650981e-144REM1_BRAOB B3 domain-containing protein REM1 OS=Brassica oleracea var. botrytis GN=REM1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8S8E83e-24Q8S8E8_ARATH Putative uncharacterized protein At2g24690 OS=Arabidopsis thaliana GN=At2g24690 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15793(4 genes,3 taxa):Arabidopsis thalianaAT4G31610.1
ORTHOMCL15793(4 genes,3 taxa):Brassica oleraceaBol017973
ORTHOMCL15793(4 genes,3 taxa):Brassica oleraceaBol017978
ORTHOMCL15793(4 genes,3 taxa):Brassica rapaBra011285
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3269215..4168888 (+)B.rapaA09:14954195..15456043 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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