Basic Information
Gene Model:Bol017973
Gene Family:Transcription Factor Families
Chromosome:C01
Scaffold:Scaffold000142
Sequence:
 | 
Gene Structure
Nucleotide Length:2005 bp
Transcript Length:1440 bp
Protein Length:479 aa
Strand:-
Location:C01: 3736033 : 3738037
Gene CDSs(7): 1-50 | 134-416 | 502-747 | 882-1280 | 1379-1473 | 1554-1854 | 1940-2005 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 139 237 1.9e-28IPR003340Transcriptional factor B3
HMMPfamPF02362B3 272 370 5.6e-25IPR003340Transcriptional factor B3
HMMPfamPF02362B3 9 89 2.6e-14IPR003340Transcriptional factor B3
ProfileScanPS50863B3 139 236 15.834IPR003340Transcriptional factor B3
ProfileScanPS50863B3 272 369 11.998IPR003340Transcriptional factor B3
ProfileScanPS50863B3 1 92 11.209IPR003340Transcriptional factor B3
Segsegseg 100 125 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 160 250 0.00085Not foundNot found
Gene3DG3DSA:2.40.330.10no description 10 88 1.4e-07Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O650980.0REM1_BRAOB B3 domain-containing protein REM1 OS=Brassica oleracea var. botrytis GN=REM1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8S8E85e-24Q8S8E8_ARATH Putative uncharacterized protein At2g24690 OS=Arabidopsis thaliana GN=At2g24690 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL15793(4 genes,3 taxa):Arabidopsis thalianaAT4G31610.1
ORTHOMCL15793(4 genes,3 taxa):Brassica oleraceaBol017973
ORTHOMCL15793(4 genes,3 taxa):Brassica oleraceaBol017978
ORTHOMCL15793(4 genes,3 taxa):Brassica rapaBra011285
Tandem Duplication
ClusterGene Num.Gene List
Cluster_9222Bol017973 Bol017974 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3269215..4168888 (+)B.rapaA09:14954195..15456043 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G316101531749915320020Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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