Basic Information
Gene Model:Bol017933
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000142
Sequence:
 | 
Gene Structure
Nucleotide Length:953 bp
Transcript Length:663 bp
Protein Length:220 aa
Strand:+
Location:C01: 3475087 : 3476039
Gene CDSs(4): 1-220 | 365-555 | 627-790 | 866-953 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00957Synaptobrevin 124 212 3.9e-42IPR001388Synaptobrevin
superfamilySSF64356SNARE-like 2 120 1.2e-32IPR011012Longin-like
ProfileScanPS50859LONGIN 7 112 32.143IPR010908Longin
ProfileScanPS50892V_SNARE 127 187 18.228IPR001388Synaptobrevin
PatternScanPS00417SYNAPTOBREVIN 145 164 NAIPR001388Synaptobrevin
Segsegseg 193 210 NANot foundNot found
HMMPantherPTHR21136:SF8VAMP-7 7 220 7.2e-108Not foundNot found
HMMPantherPTHR21136SNARE PROTEINS 7 220 7.2e-108Not foundNot found
Gene3DG3DSA:1.20.5.110no description 112 191 2.2e-22Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
O493771e-111VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q0WWE71e-110Q0WWE7_ARATH Vesicle-associated membrane protein 7C OS=Arabidopsis thaliana GN=At4g32150 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT4G321501e-111K08515VAMP7vesicle-associated membrane protein 7
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:1110751..4283482 (-)A.thalianaChr4:14920534..17373930 (+)410
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:3269215..4168888 (+)B.rapaA09:14954195..15456043 (+)25
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G321501552611315527879Chr4Subgenome_III(LF)1224
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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