Basic Information
Gene Model:Bol017842
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000143
Sequence:
 | 
Gene Structure
Nucleotide Length:1614 bp
Transcript Length:1614 bp
Protein Length:537 aa
Strand:+
Location:C04: 6408423 : 6410036
Gene CDSs(1): 1-1614 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 197 230 NANot foundNot found
Segsegseg 34 46 NANot foundNot found
HMMPfamPF07839CaM_binding 402 515 3.1e-48IPR012417Calmodulin-binding protein, plant
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9SII11e-170Q9SII1_ARATH Putative uncharacterized protein At2g38800 OS=Arabidopsis thaliana GN=At2g38800 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2472(14 genes,7 taxa):Arabidopsis thalianaAT2G38800.1
ORTHOMCL2472(14 genes,7 taxa):Arabidopsis thalianaAT3G54570.1
ORTHOMCL2472(14 genes,7 taxa):Brassica oleraceaBol017842
ORTHOMCL2472(14 genes,7 taxa):Brassica oleraceaBol020385
ORTHOMCL2472(14 genes,7 taxa):Brassica rapaBra000096
ORTHOMCL2472(14 genes,7 taxa):Brassica rapaBra005077
ORTHOMCL2472(14 genes,7 taxa):Oryza sativaOs01t0950700-01
ORTHOMCL2472(14 genes,7 taxa):Oryza sativaOs05t0381700-01
ORTHOMCL2472(14 genes,7 taxa):Oryza sativaOs05t0381700-02
ORTHOMCL2472(14 genes,7 taxa):Populus trichocarpaPOPTR_0001s06150.1
ORTHOMCL2472(14 genes,7 taxa):Populus trichocarpaPOPTR_0003s20040.1
ORTHOMCL2472(14 genes,7 taxa):Sorghum bicolorSb03g045870.1
ORTHOMCL2472(14 genes,7 taxa):Sorghum bicolorSb09g018890.1
ORTHOMCL2472(14 genes,7 taxa):Carica papayaevm.TU.supercontig_197.5
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:4584857..7469282 (+)A.thalianaChr2:15529006..16686709 (+)155
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3683395..7469282 (+)B.rapaA05:19820850..21759172 (-)222
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
JAT2G388001621699916219159Chr2Subgenome_III(LF)512
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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