Basic Information
Gene Model:Bol017712
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000144
Sequence:
 | 
Gene Structure
Nucleotide Length:1566 bp
Transcript Length:1491 bp
Protein Length:496 aa
Strand:-
Location:C07: 13018454 : 13020019
Gene CDSs(2): 1-539 | 615-1566 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103473MFS general substrat 88 485 3.7e-57IPR016196Major facilitator superfamily, general substrate transporter
Segsegseg 258 276 NANot foundNot found
HMMPfamPF07690MFS_1 29 444 2.6e-35IPR011701Major facilitator superfamily MFS-1
ProfileScanPS50850MFS 31 482 24.606Not foundNot found
HMMPantherPTHR11662SODIUM-DEPENDENT PHO 25 492 3.8e-242Not foundNot found
HMMPantherPTHR11662:SF10SOLUTE CARRIER FAMIL 25 492 3.8e-242Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q7SY291e-112SPX2_DANRE Sugar phosphate exchanger 2 OS=Danio rerio GN=slc37a2 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9SL560.0Q9SL56_ARATH Putative membrane transporter OS=Arabidopsis thaliana GN=At2g13100 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_9112280.0K13783SLC37A1_2MFS transporter, OPA family, solute carrier family 37 (glycerol-3-phosphate transporter), member 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL11406(7 genes,7 taxa):Arabidopsis thalianaAT2G13100.1
ORTHOMCL11406(7 genes,7 taxa):Brassica oleraceaBol017712
ORTHOMCL11406(7 genes,7 taxa):Brassica rapaBra002022
ORTHOMCL11406(7 genes,7 taxa):Oryza sativaOs06t0179900-01
ORTHOMCL11406(7 genes,7 taxa):Populus trichocarpaPOPTR_0018s12290.1
ORTHOMCL11406(7 genes,7 taxa):Sorghum bicolorSb10g005430.1
ORTHOMCL11406(7 genes,7 taxa):Carica papayaevm.TU.supercontig_46.86
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:10915768..13776746 (-)A.thalianaChr4:16664822..17175857 (+)37
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:11194729..14628022 (+)B.rapaA10:4796831..6248193 (-)87
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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