Basic Information
Gene Model:Bol017649
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000145
Sequence:
 | 
Gene Structure
Nucleotide Length:801 bp
Transcript Length:717 bp
Protein Length:238 aa
Strand:+
Location:C04: 17427499 : 17428299
Gene CDSs(2): 1-375 | 460-801 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 2 236 3.7e-98IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 2 236 3.7e-98Not foundNot found
superfamilySSF81606Protein serine/threo 7 235 1.9e-63IPR001932Protein phosphatase 2C-related
PatternScanPS01032PP2C 12 20 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
HMMSmartSM00332no description 1 232 1.1e-66IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 8 236 2.7e-62IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 13 227 1.3e-76IPR014045Protein phosphatase 2C, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
O808711e-117P2C25_ARATH Probable protein phosphatase 2C 25 OS=Arabidopsis thaliana GN=At2g30020 PE=1 SV=1
TrEMBL
Best HitE_value Description
B1PBY31e-100B1PBY3_ARALP Putative uncharacterized protein OS=Arabidopsis lyrata subsp. petraea GN=AP3_H09.2 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384106e-76K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7645(9 genes,8 taxa):Arabidopsis thalianaAT2G30020.1
ORTHOMCL7645(9 genes,8 taxa):Brassica oleraceaBol017649
ORTHOMCL7645(9 genes,8 taxa):Brassica rapaBra022772
ORTHOMCL7645(9 genes,8 taxa):Vitis viniferaGSVIVT01024710001
ORTHOMCL7645(9 genes,8 taxa):Oryza sativaOs03t0292100-01
ORTHOMCL7645(9 genes,8 taxa):Populus trichocarpaPOPTR_0001s28510.1
ORTHOMCL7645(9 genes,8 taxa):Populus trichocarpaPOPTR_0009s07720.1
ORTHOMCL7645(9 genes,8 taxa):Sorghum bicolorSb01g038410.1
ORTHOMCL7645(9 genes,8 taxa):Carica papayaevm.TU.supercontig_2.408
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:16340558..17900515 (+)A.thalianaChr2:12469724..12905198 (+)46
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:16927595..18124972 (+)B.rapaA09:1175153..1329794 (-)11
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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