Basic Information
Gene Model:Bol017589
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000145
Sequence:
 | 
Gene Structure
Nucleotide Length:1673 bp
Transcript Length:1101 bp
Protein Length:366 aa
Strand:+
Location:C04: 16583888 : 16585560
Gene CDSs(3): 1-348 | 438-758 | 1242-1673 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF81606Protein serine/threo 51 362 4.9e-79IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 56 359 7.5e-129IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 56 359 7.5e-129Not foundNot found
HMMPfamPF00481PP2C 71 350 5.8e-81IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 105 113 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene3DG3DSA:3.60.40.10no description 72 361 2.1e-75IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 62 355 4.1e-100IPR001932Protein phosphatase 2C-related
Segsegseg 158 168 NANot foundNot found
Segsegseg 131 150 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q9ZW211e-159P2C24_ARATH Probable protein phosphatase 2C 24 OS=Arabidopsis thaliana GN=At2g29380 PE=2 SV=1
TrEMBL
Best HitE_value Description
B2BXK41e-165B2BXK4_ARALY Protein-phosphatase-2C OS=Arabidopsis lyrata subsp. lyrata GN=PPh2C PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT2G293801e-159K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1234(18 genes,8 taxa):Arabidopsis thalianaAT1G07430.1
ORTHOMCL1234(18 genes,8 taxa):Arabidopsis thalianaAT2G29380.1
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol004110
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol017589
ORTHOMCL1234(18 genes,8 taxa):Brassica oleraceaBol041128
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra015579
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra018398
ORTHOMCL1234(18 genes,8 taxa):Brassica rapaBra031574
ORTHOMCL1234(18 genes,8 taxa):Vitis viniferaGSVIVT01024875001
ORTHOMCL1234(18 genes,8 taxa):Oryza sativaOs01t0846300-01
ORTHOMCL1234(18 genes,8 taxa):Oryza sativaOs03t0268600-01
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.1
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.2
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0001s25200.3
ORTHOMCL1234(18 genes,8 taxa):Populus trichocarpaPOPTR_0009s04210.1
ORTHOMCL1234(18 genes,8 taxa):Sorghum bicolorSb01g039890.1
ORTHOMCL1234(18 genes,8 taxa):Sorghum bicolorSb03g039630.1
ORTHOMCL1234(18 genes,8 taxa):Carica papayaevm.TU.supercontig_81.92
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:16340558..17900515 (+)A.thalianaChr2:12469724..12905198 (+)46
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:16419863..19120215 (+)B.rapaA05:14486769..15705783 (-)95
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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