Basic Information
Gene Model:Bol017459
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000146
Sequence:
 | 
Gene Structure
Nucleotide Length:3692 bp
Transcript Length:990 bp
Protein Length:329 aa
Strand:+
Location:C03: 53991940 : 53995631
Gene CDSs(8): 1-216 | 304-378 | 569-660 | 738-824 | 1010-1168 | 1289-1387 | 1624-1751 | 3559-3692 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00331no description 62 297 0.00047IPR001932Protein phosphatase 2C-related
HMMSmartSM00332no description 41 295 5.2e-100IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 47 297 5.3e-79IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 30 297 2.3e-80IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 29 297 1.8e-131Not foundNot found
HMMPantherPTHR13832PROTEIN PHOSPHATASE 29 297 1.8e-131IPR015655Protein phosphatase 2C
HMMPfamPF00481PP2C 50 290 1.3e-77IPR014045Protein phosphatase 2C, N-terminal
PatternScanPS01032PP2C 82 90 NAIPR000222Protein phosphatase 2C, manganese/magnesium aspartate binding site
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
GO:0004722 Molecular Function protein serine/threonine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008287 Cellular Component protein serine/threonine phosphatase complex
Swiss-Prot
Best HitE_value Description
Q8RXV31e-173P2C59_ARATH Probable protein phosphatase 2C 59 OS=Arabidopsis thaliana GN=WIN2 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RNR41e-149B9RNR4_RICCO Protein phosphatase 2c, putative OS=Ricinus communis GN=RCOM_0920170 PE=3 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
sbi:SORBI_01g0384102e-45K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL6543(10 genes,8 taxa):Arabidopsis thalianaAT4G31750.1
ORTHOMCL6543(10 genes,8 taxa):Brassica oleraceaBol017459
ORTHOMCL6543(10 genes,8 taxa):Brassica rapaBra010222
ORTHOMCL6543(10 genes,8 taxa):Vitis viniferaGSVIVT01036034001
ORTHOMCL6543(10 genes,8 taxa):Oryza sativaOs02t0149800-01
ORTHOMCL6543(10 genes,8 taxa):Populus trichocarpaPOPTR_0006s28340.1
ORTHOMCL6543(10 genes,8 taxa):Populus trichocarpaPOPTR_0018s03090.1
ORTHOMCL6543(10 genes,8 taxa):Populus trichocarpaPOPTR_0018s03090.3
ORTHOMCL6543(10 genes,8 taxa):Sorghum bicolorSb04g003600.1
ORTHOMCL6543(10 genes,8 taxa):Carica papayaevm.TU.supercontig_40.23
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:52960962..55163450 (-)A.thalianaChr4:14391938..16215594 (+)147
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:53546488..54018579 (+)B.rapaA08:13662694..14013858 (-)22
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G317501536441815367716Chr4Subgenome_II147
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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