Basic Information
Gene Model:Bol017452
Gene Family:Transcription Factor Families
Chromosome:C03
Scaffold:Scaffold000146
Sequence:
 | 
Gene Structure
Nucleotide Length:1963 bp
Transcript Length:1482 bp
Protein Length:493 aa
Strand:-
Location:C03: 54085129 : 54087091
Gene CDSs(7): 1-66 | 144-465 | 545-642 | 737-1153 | 1231-1476 | 1563-1845 | 1914-1963 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 286 384 8.6e-26IPR003340Transcriptional factor B3
HMMPfamPF02362B3 147 245 4.3e-27IPR003340Transcriptional factor B3
HMMPfamPF02362B3 9 95 7.3e-17IPR003340Transcriptional factor B3
ProfileScanPS50863B3 286 386 12.929IPR003340Transcriptional factor B3
ProfileScanPS50863B3 1 93 12.562IPR003340Transcriptional factor B3
ProfileScanPS50863B3 147 244 14.565IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 10 95 4e-08Not foundNot found
Segsegseg 107 131 NANot foundNot found
Segsegseg 249 253 NANot foundNot found
Segsegseg 266 279 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O650981e-150REM1_BRAOB B3 domain-containing protein REM1 OS=Brassica oleracea var. botrytis GN=REM1 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8S8E85e-22Q8S8E8_ARATH Putative uncharacterized protein At2g24690 OS=Arabidopsis thaliana GN=At2g24690 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24957(2 genes,2 taxa):Brassica oleraceaBol017452
ORTHOMCL24957(2 genes,2 taxa):Brassica rapaBra010228
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:52960962..55163450 (-)A.thalianaChr4:14391938..16215594 (+)147
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:53766885..55163450 (+)B.rapaA08:3909915..4704238 (+)85
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
UAT4G316101531749915320020Chr4Subgenome_II147
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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