Basic Information
Gene Model:Bol017399
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000147
Sequence:
 | 
Gene Structure
Nucleotide Length:2221 bp
Transcript Length:1122 bp
Protein Length:373 aa
Strand:+
Location:C06: 34862357 : 34864577
Gene CDSs(7): 1-181 | 282-433 | 659-817 | 914-1169 | 1256-1372 | 1849-1911 | 2028-2221 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 226 337 1.4e-06Not foundNot found
superfamilySSF103481Multidrug resistance 44 162 0.00059Not foundNot found
HMMPfamPF00892DUF6 19 132 2.9e-05IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1631e-315NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HVC61e-124B9HVC6_POPTR Putative uncharacterized protein N21L6 (Fragment) OS=Populus trichocarpa GN=N21L6 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5833(10 genes,6 taxa):Arabidopsis thalianaAT1G70260.1
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol003334
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol017399
ORTHOMCL5833(10 genes,6 taxa):Brassica oleraceaBol032985
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra003959
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra007904
ORTHOMCL5833(10 genes,6 taxa):Brassica rapaBra016228
ORTHOMCL5833(10 genes,6 taxa):Vitis viniferaGSVIVT01020185001
ORTHOMCL5833(10 genes,6 taxa):Populus trichocarpaPOPTR_0010s10610.1
ORTHOMCL5833(10 genes,6 taxa):Carica papayaevm.TU.supercontig_258.5
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:34565514..35824044 (-)A.thalianaChr1:25861123..26755359 (+)57
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:34565514..35214006 (+)B.rapaA07:21268315..21811860 (+)27
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
EAT1G702602645684426459450Chr1Subgenome_II331
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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