Basic Information
Gene Model:Bol017253
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000148
Sequence:
 | 
Gene Structure
Nucleotide Length:2149 bp
Transcript Length:1473 bp
Protein Length:490 aa
Strand:-
Location:C09: 27914944 : 27917092
Gene CDSs(9): 1-241 | 328-489 | 577-710 | 780-950 | 1041-1146 | 1241-1484 | 1566-1860 | 1942-2009 | 2098-2149 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51017CCT 432 474 15.200IPR010402CCT domain
ProfileScanPS50110RESPONSE_REGULATORY 56 174 27.347IPR001789Signal transduction response regulator, receiver region
superfamilySSF52172CheY-like 52 181 1.4e-30IPR011006CheY-like
Segsegseg 410 427 NANot foundNot found
Segsegseg 212 234 NANot foundNot found
Segsegseg 197 208 NANot foundNot found
Segsegseg 179 188 NANot foundNot found
HMMSmartSM00448no description 55 170 5.3e-24IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 56 196 4.4e-26Not foundNot found
HMMPfamPF06203CCT 432 476 4.5e-21IPR010402CCT domain
HMMPfamPF00072Response_reg 57 171 1.6e-21IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 14 167 3.4e-14Not foundNot found
HMMPantherPTHR23283:SF21TWO-COMPONENT SYSTEM 14 167 3.4e-14Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LVG40.0APRR3_ARATH Two-component response regulator-like APRR3 OS=Arabidopsis thaliana GN=APRR3 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0SVU80.0C0SVU8_ARATH Putative uncharacterized protein At5g60100 (Fragment) OS=Arabidopsis thaliana GN=At5g60100 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G601000.0K12131APRR3pseudo-response regulator 3
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19553(3 genes,3 taxa):Arabidopsis thalianaAT5G60100.1
ORTHOMCL19553(3 genes,3 taxa):Brassica oleraceaBol017253
ORTHOMCL19553(3 genes,3 taxa):Brassica rapaBra002512
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)A.thalianaChr5:23144980..24273634 (+)179
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)B.rapaA10:8333857..9765254 (-)184
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G601002419799924201364Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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