Basic Information
Gene Model:Bol017251
Gene Family:Transcription Factor Families
Chromosome:C09
Scaffold:Scaffold000148
Sequence:
 | 
Gene Structure
Nucleotide Length:2838 bp
Transcript Length:1365 bp
Protein Length:454 aa
Strand:+
Location:C09: 27946639 : 27949476
Gene CDSs(9): 1-306 | 742-855 | 1023-1120 | 1261-1352 | 1699-1847 | 1928-2015 | 2127-2157 | 2241-2266 | 2378-2838 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 136 192 17.332IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 135 195 8.6e-18IPR016177DNA-binding, integrase-type
Segsegseg 403 422 NANot foundNot found
Segsegseg 380 400 NANot foundNot found
Segsegseg 168 179 NANot foundNot found
Segsegseg 124 135 NANot foundNot found
Segsegseg 61 72 NANot foundNot found
Segsegseg 86 102 NANot foundNot found
HMMSmartSM00380no description 136 198 1.1e-30IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene3DG3DSA:3.30.730.10no description 135 195 1.9e-12IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 135 185 6.2e-16IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LVG20.0TOE2_ARATH AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana GN=TOE2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9SW788e-71B9SW78_RICCO Protein AINTEGUMENTA, putative OS=Ricinus communis GN=RCOM_0328910 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G601200.0K09284AP2AP2-like factor, euAP2 lineage
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL14450(5 genes,3 taxa):Arabidopsis thalianaAT5G60120.1
ORTHOMCL14450(5 genes,3 taxa):Brassica oleraceaBol008932
ORTHOMCL14450(5 genes,3 taxa):Brassica oleraceaBol017251
ORTHOMCL14450(5 genes,3 taxa):Brassica rapaBra002510
ORTHOMCL14450(5 genes,3 taxa):Brassica rapaBra020262
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)A.thalianaChr5:23144980..24273634 (+)179
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)B.rapaA10:8333857..9765254 (-)184
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G601202420778624211724Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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