Basic Information
Gene Model:Bol017173
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000149
Sequence:
 | 
Gene Structure
Nucleotide Length:1050 bp
Transcript Length:1050 bp
Protein Length:349 aa
Strand:-
Location:C07: 25504535 : 25505584
Gene CDSs(1): 1-1050 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 119 176 23.775IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 197 213 NANot foundNot found
Segsegseg 176 192 NANot foundNot found
Gene3DG3DSA:3.30.730.10no description 118 179 2.1e-22IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 119 182 1.6e-39IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 118 169 1.8e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 118 179 3.4e-23IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FK121e-118CRF3_ARATH Ethylene-responsive transcription factor CRF3 OS=Arabidopsis thaliana GN=CRF3 PE=2 SV=1
TrEMBL
Best HitE_value Description
B3LFA01e-90B3LFA0_ARATH At4g27950 OS=Arabidopsis thaliana PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002466416e-27K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8238(9 genes,5 taxa):Arabidopsis thalianaAT4G27950.1
ORTHOMCL8238(9 genes,5 taxa):Arabidopsis thalianaAT5G53290.1
ORTHOMCL8238(9 genes,5 taxa):Brassica oleraceaBol017173
ORTHOMCL8238(9 genes,5 taxa):Brassica oleraceaBol021157
ORTHOMCL8238(9 genes,5 taxa):Brassica rapaBra010389
ORTHOMCL8238(9 genes,5 taxa):Brassica rapaBra022643
ORTHOMCL8238(9 genes,5 taxa):Populus trichocarpaPOPTR_0012s01260.1
ORTHOMCL8238(9 genes,5 taxa):Populus trichocarpaPOPTR_0015s06070.1
ORTHOMCL8238(9 genes,5 taxa):Carica papayaevm.TU.supercontig_3.43
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:25064403..26315049 (+)A.thalianaChr5:21478841..21914749 (+)51
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:24947695..26226626 (+)B.rapaA10:11613097..12508076 (-)38
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G532902161781321619267Chr5Subgenome_I48
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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