Basic Information
Gene Model:Bol017167
Gene Family:Transcription Factor Families
Chromosome:C07
Scaffold:Scaffold000149
Sequence:
 | 
Gene Structure
Nucleotide Length:1402 bp
Transcript Length:1059 bp
Protein Length:352 aa
Strand:-
Location:C07: 25406034 : 25407435
Gene CDSs(2): 1-654 | 998-1402 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50888HLH 70 153 10.981IPR001092Basic helix-loop-helix dimerisation region bHLH
Segsegseg 314 326 NANot foundNot found
Segsegseg 198 213 NANot foundNot found
Segsegseg 226 237 NANot foundNot found
Segsegseg 252 273 NANot foundNot found
Segsegseg 77 102 NANot foundNot found
Segsegseg 171 197 NANot foundNot found
Gene3DG3DSA:4.10.280.10no description 98 158 3.9e-06IPR011598Helix-loop-helix DNA-binding
HMMSmartSM00353no description 107 158 6e-11IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 102 153 3.2e-14IPR001092Basic helix-loop-helix dimerisation region bHLH
Coilcoilcoiled-coil 149 170 NANot foundNot found
superfamilySSF47459HLH, helix-loop-heli 99 185 2e-17IPR011598Helix-loop-helix DNA-binding
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q700C71e-125SPCH_ARATH Transcription factor SPEECHLESS OS=Arabidopsis thaliana GN=SPCH PE=1 SV=1
TrEMBL
Best HitE_value Description
B9RIM04e-81B9RIM0_RICCO DNA binding protein, putative OS=Ricinus communis GN=RCOM_1580560 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8369259e-08K13422MYC2transcription factor MYC2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5374(11 genes,8 taxa):Arabidopsis thalianaAT5G53210.1
ORTHOMCL5374(11 genes,8 taxa):Brassica oleraceaBol017167
ORTHOMCL5374(11 genes,8 taxa):Brassica rapaBra022638
ORTHOMCL5374(11 genes,8 taxa):Vitis viniferaGSVIVT01028719001
ORTHOMCL5374(11 genes,8 taxa):Oryza sativaOs02t0257500-00
ORTHOMCL5374(11 genes,8 taxa):Oryza sativaOs06t0526100-01
ORTHOMCL5374(11 genes,8 taxa):Populus trichocarpaPOPTR_0012s01370.1
ORTHOMCL5374(11 genes,8 taxa):Populus trichocarpaPOPTR_0015s06160.1
ORTHOMCL5374(11 genes,8 taxa):Sorghum bicolorSb04g009390.1
ORTHOMCL5374(11 genes,8 taxa):Sorghum bicolorSb10g020490.1
ORTHOMCL5374(11 genes,8 taxa):Carica papayaevm.TU.supercontig_3.51
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:25064403..26315049 (+)A.thalianaChr5:21478841..21914749 (+)51
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:24947695..26226626 (+)B.rapaA10:11613097..12508076 (-)38
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G532102158660621588941Chr5Subgenome_I48
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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