Basic Information
Gene Model:Bol017132
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:C07
Scaffold:Scaffold000150
Sequence:
 | 
Gene Structure
Nucleotide Length:4629 bp
Transcript Length:2886 bp
Protein Length:961 aa
Strand:-
Location:C07: 36551637 : 36556265
Gene CDSs(12): 1-42 | 185-265 | 448-528 | 635-780 | 898-1099 | 1193-1372 | 1468-1628 | 2021-3122 | 3487-3633 | 3718-3945 | 4036-4193 | 4272-4629 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00195no description 735 877 1.5e-23IPR020422Dual specificity phosphatase, subgroup, catalytic domain
ProfileScanPS50056TYR_PHOSPHATASE_2 804 856 12.247IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
ProfileScanPS50054TYR_PHOSPHATASE_DUAL 735 879 30.850IPR020422Dual specificity phosphatase, subgroup, catalytic domain
superfamilySSF52799(Phosphotyrosine pro 733 878 4.7e-38Not foundNot found
superfamilySSF56112Protein kinase-like 85 471 2e-86IPR011009Protein kinase-like domain
HMMPantherPTHR10159:SF22VHR-RELATED DUAL SPE 736 942 3.6e-173Not foundNot found
HMMPantherPTHR10159DUAL SPECIFICITY PRO 736 942 3.6e-173Not foundNot found
PatternScanPS00383TYR_PHOSPHATASE_1 822 832 NAIPR016130Protein-tyrosine phosphatase, active site
Gene3DG3DSA:3.90.190.10no description 708 886 1.2e-38Not foundNot found
Segsegseg 904 925 NANot foundNot found
Segsegseg 944 958 NANot foundNot found
Segsegseg 151 180 NANot foundNot found
Segsegseg 282 298 NANot foundNot found
Segsegseg 395 415 NANot foundNot found
HMMPfamPF00782DSPc 735 877 5.1e-23IPR000340Dual specificity phosphatase, catalytic domain
HMMPfamPF09192Act-Frag_cataly 134 456 4.3e-157IPR015275Actin-fragmin kinase, catalytic
Gene Ontology
GO TermGO TypeDescription
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
Q76I794e-17SSH1_MOUSE Protein phosphatase Slingshot homolog 1 OS=Mus musculus GN=Ssh1 PE=1 SV=1
TrEMBL
Best HitE_value Description
Q75QN60.0Q75QN6_ARATH PROPYZAMIDE-HTPERSENSITIVE 1 OS=Arabidopsis thaliana GN=PHS1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G236103e-23K05766SSHslingshot
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4158(12 genes,8 taxa):Arabidopsis thalianaAT5G23720.1
ORTHOMCL4158(12 genes,8 taxa):Brassica oleraceaBol017132
ORTHOMCL4158(12 genes,8 taxa):Brassica rapaBra009705
ORTHOMCL4158(12 genes,8 taxa):Vitis viniferaGSVIVT01008633001
ORTHOMCL4158(12 genes,8 taxa):Oryza sativaOs01t0311500-01
ORTHOMCL4158(12 genes,8 taxa):Oryza sativaOs01t0311500-02
ORTHOMCL4158(12 genes,8 taxa):Oryza sativaOs01t0347000-01
ORTHOMCL4158(12 genes,8 taxa):Populus trichocarpaPOPTR_0012s10760.1
ORTHOMCL4158(12 genes,8 taxa):Populus trichocarpaPOPTR_0015s11630.1
ORTHOMCL4158(12 genes,8 taxa):Sorghum bicolorSb03g012770.1
ORTHOMCL4158(12 genes,8 taxa):Sorghum bicolorSb03g013770.1
ORTHOMCL4158(12 genes,8 taxa):Carica papayaevm.TU.supercontig_4.103
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35067783..36982847 (-)A.thalianaChr5:7696135..9426417 (+)210
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:35067783..36747987 (+)B.rapaA06:11227872..12854052 (-)188
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2372079982308002805Chr5Subgenome_III(LF)206
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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