Basic Information
Gene Model:Bol017075
Gene Family:Sulfurtransferasese/Rhodanese Gene Family
Chromosome:C07
Scaffold:Scaffold000150
Sequence:
 | 
Gene Structure
Nucleotide Length:1908 bp
Transcript Length:1167 bp
Protein Length:388 aa
Strand:+
Location:C07: 36856492 : 36858399
Gene CDSs(6): 1-232 | 327-458 | 548-689 | 1090-1282 | 1359-1604 | 1687-1908 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50206RHODANESE_3 233 354 12.124IPR001763Rhodanese-like
Gene3DG3DSA:3.40.250.10no description 223 347 0.00011IPR001763Rhodanese-like
Segsegseg 9 29 NANot foundNot found
Segsegseg 190 198 NANot foundNot found
superfamilySSF52821Rhodanese/Cell cycle 199 341 9.5e-09IPR001763Rhodanese-like
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9FN480.0Q9FN48_ARATH Emb|CAB75797.1 OS=Arabidopsis thaliana GN=CaS PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL10561(8 genes,7 taxa):Arabidopsis thalianaAT5G23060.1
ORTHOMCL10561(8 genes,7 taxa):Brassica oleraceaBol004807
ORTHOMCL10561(8 genes,7 taxa):Brassica oleraceaBol017075
ORTHOMCL10561(8 genes,7 taxa):Brassica rapaBra013013
ORTHOMCL10561(8 genes,7 taxa):Vitis viniferaGSVIVT01008201001
ORTHOMCL10561(8 genes,7 taxa):Oryza sativaOs02t0729400-01
ORTHOMCL10561(8 genes,7 taxa):Populus trichocarpaPOPTR_0015s06230.1
ORTHOMCL10561(8 genes,7 taxa):Sorghum bicolorSb04g029100.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:36584296..37496362 (-)A.thalianaChr5:2285040..2758362 (+)33
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:36834487..37439033 (+)B.rapaA09:8782283..8985771 (-)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2306077365907738535Chr5Subgenome_III(LF)206
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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