Basic Information
Gene Model:Bol017037
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000150
Sequence:
 | 
Gene Structure
Nucleotide Length:1309 bp
Transcript Length:924 bp
Protein Length:307 aa
Strand:+
Location:C07: 37168966 : 37170274
Gene CDSs(4): 1-198 | 403-533 | 611-704 | 809-1309 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50192T_SNARE 242 304 15.662IPR000727Target SNARE coiled-coil region
Coilcoilcoiled-coil 273 301 NANot foundNot found
HMMPfamPF05739SNARE 247 307 1e-11IPR000727Target SNARE coiled-coil region
HMMPfamPF00835SNAP-25 185 246 2.7e-12IPR000928SNAP-25
HMMSmartSM00397no description 237 304 5.9e-05IPR000727Target SNARE coiled-coil region
HMMSmartSM00397no description 106 175 1.1IPR000727Target SNARE coiled-coil region
Gene3DG3DSA:1.20.5.110no description 99 177 4e-06Not foundNot found
Gene3DG3DSA:1.20.5.110no description 241 306 4.3e-20Not foundNot found
HMMPantherPTHR19305SYNAPTOSOMAL ASSOCIA 45 307 2e-59Not foundNot found
Segsegseg 249 262 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q9S7P91e-153SNP33_ARATH SNAP25 homologous protein SNAP33 OS=Arabidopsis thaliana GN=SNAP33 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9IE111e-120B9IE11_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_824554 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G612101e-153K08509SNAP29synaptosomal-associated protein, 29kDa
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL5401(11 genes,8 taxa):Arabidopsis thalianaAT5G61210.1
ORTHOMCL5401(11 genes,8 taxa):Brassica oleraceaBol017037
ORTHOMCL5401(11 genes,8 taxa):Brassica rapaBra012978
ORTHOMCL5401(11 genes,8 taxa):Vitis viniferaGSVIVT01012200001
ORTHOMCL5401(11 genes,8 taxa):Oryza sativaOs02t0529500-01
ORTHOMCL5401(11 genes,8 taxa):Populus trichocarpaPOPTR_0012s06830.1
ORTHOMCL5401(11 genes,8 taxa):Populus trichocarpaPOPTR_0012s06830.2
ORTHOMCL5401(11 genes,8 taxa):Populus trichocarpaPOPTR_0015s03450.1
ORTHOMCL5401(11 genes,8 taxa):Sorghum bicolorSb02g010100.2
ORTHOMCL5401(11 genes,8 taxa):Sorghum bicolorSb04g021560.1
ORTHOMCL5401(11 genes,8 taxa):Carica papayaevm.TU.supercontig_94.7
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:36584296..37496362 (-)A.thalianaChr5:2285040..2758362 (+)33
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:37106397..37398210 (+)B.rapaA10:3114880..3336658 (-)10
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G612102462329924625631Chr5Subgenome_III(LF)67
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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