Basic Information
Gene Model:Bol017021
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000150
Sequence:
 | 
Gene Structure
Nucleotide Length:2132 bp
Transcript Length:1722 bp
Protein Length:573 aa
Strand:+
Location:C07: 37245401 : 37247532
Gene CDSs(6): 1-983 | 1057-1204 | 1296-1451 | 1530-1663 | 1748-1909 | 1994-2132 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF52172CheY-like 18 147 5.6e-26IPR011006CheY-like
ProfileScanPS51017CCT 487 529 15.130IPR010402CCT domain
ProfileScanPS50110RESPONSE_REGULATORY 22 140 26.633IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 17 145 2.3e-12Not foundNot found
HMMPantherPTHR23283:SF47SENSORY TRANSDUCTION 17 145 2.3e-12Not foundNot found
HMMPfamPF06203CCT 487 531 1.4e-20IPR010402CCT domain
HMMPfamPF00072Response_reg 23 137 2e-16IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 10 150 1.8e-22Not foundNot found
Segsegseg 549 560 NANot foundNot found
HMMSmartSM00448no description 21 136 2.4e-19IPR001789Signal transduction response regulator, receiver region
Segsegseg 207 217 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9LKL20.0APRR1_ARATH Two-component response regulator-like APRR1 OS=Arabidopsis thaliana GN=APRR1 PE=1 SV=1
TrEMBL
Best HitE_value Description
C0SNP31e-146C0SNP3_SOYBN Timing of CAB expression 1 OS=Glycine max GN=TOC1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G613800.0K12127TOC1, APRR1pseudo-response regulator 1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2221(15 genes,8 taxa):Arabidopsis thalianaAT5G61380.1
ORTHOMCL2221(15 genes,8 taxa):Brassica oleraceaBol017021
ORTHOMCL2221(15 genes,8 taxa):Brassica oleraceaBol036283
ORTHOMCL2221(15 genes,8 taxa):Brassica rapaBra012964
ORTHOMCL2221(15 genes,8 taxa):Brassica rapaBra035933
ORTHOMCL2221(15 genes,8 taxa):Vitis viniferaGSVIVT01007965001
ORTHOMCL2221(15 genes,8 taxa):Oryza sativaOs02t0618200-01
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07300.1
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.1
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.2
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.3
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.4
ORTHOMCL2221(15 genes,8 taxa):Populus trichocarpaPOPTR_0015s07310.5
ORTHOMCL2221(15 genes,8 taxa):Sorghum bicolorSb04g026190.1
ORTHOMCL2221(15 genes,8 taxa):Carica papayaevm.TU.supercontig_13.284
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:36584296..37496362 (-)A.thalianaChr5:2285040..2758362 (+)33
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:37106397..37398210 (+)B.rapaA10:3114880..3336658 (-)10
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G613802467506424678550Chr5Subgenome_III(LF)67
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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