Basic Information
Gene Model:Bol017011
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000150
Sequence:
 | 
Gene Structure
Nucleotide Length:6538 bp
Transcript Length:3099 bp
Protein Length:1032 aa
Strand:-
Location:C07: 37333038 : 37339575
Gene CDSs(27): 1-157 | 318-423 | 536-669 | 744-799 | 896-982 | 1068-1388 | 1801-1920 | 2184-2318 | 2422-2498 | 2593-2668 | 3025-3129 | 3244-3413 | 3499-3601 | 3706-3818 | 4015-4216 | 4349-4480 | 4576-4690 | 4792-4877 | 4965-5060 | 5148-5284 | 5379-5481 | 5571-5650 | 5766-5844 | 5932-5989 | 6105-6202 | 6300-6394 | 6481-6538 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.40.50.300no description 22 226 8.7e-25Not foundNot found
Gene3DG3DSA:3.40.50.300no description 942 1022 8e-09Not foundNot found
Coilcoilcoiled-coil 782 803 NANot foundNot found
Coilcoilcoiled-coil 841 876 NANot foundNot found
Coilcoilcoiled-coil 615 664 NANot foundNot found
Coilcoilcoiled-coil 690 774 NANot foundNot found
Coilcoilcoiled-coil 346 367 NANot foundNot found
Coilcoilcoiled-coil 368 410 NANot foundNot found
Coilcoilcoiled-coil 209 250 NANot foundNot found
Coilcoilcoiled-coil 290 311 NANot foundNot found
superfamilySSF46579Prefoldin 640 679 0.014IPR009053Prefoldin
superfamilySSF75553Smc hinge domain 378 619 1.5e-06IPR010935SMCs flexible hinge
superfamilySSF52540P-loop containing nu 22 1022 1.2e-37Not foundNot found
Segsegseg 695 714 NANot foundNot found
Segsegseg 678 692 NANot foundNot found
Segsegseg 241 250 NANot foundNot found
Segsegseg 175 184 NANot foundNot found
HMMPantherPTHR19306STRUCTURAL MAINTENAN 6 1030 0Not foundNot found
HMMPantherPTHR19306:SF2STRUCTURAL MAINTENAN 6 1030 0Not foundNot found
BlastProDomPD936484Q806D4_9VIRU_Q806D4; 135 407 0.0005Not foundNot found
HMMPfamPF02463SMC_N 21 1024 3.3e-12IPR003395RecF/RecN/SMC protein, N-terminal
Gene Ontology
GO TermGO TypeDescription
GO:0005515 Molecular Function protein binding
GO:0005524 Molecular Function ATP binding
GO:0005694 Cellular Component chromosome
GO:0051276 Biological Process chromosome organization
Swiss-Prot
Best HitE_value Description
Q6P9I71e-105SMC6_XENLA Structural maintenance of chromosomes protein 6 OS=Xenopus laevis GN=smc6 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FII70.0Q9FII7_ARATH SMC-like protein OS=Arabidopsis thaliana GN=At5g61460 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pic:PICST_310219e-76K01553E3.6.4.1myosin ATPase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1846(16 genes,8 taxa):Arabidopsis thalianaAT5G07660.1
ORTHOMCL1846(16 genes,8 taxa):Arabidopsis thalianaAT5G61460.1
ORTHOMCL1846(16 genes,8 taxa):Brassica oleraceaBol017011
ORTHOMCL1846(16 genes,8 taxa):Brassica oleraceaBol024553
ORTHOMCL1846(16 genes,8 taxa):Brassica rapaBra012956
ORTHOMCL1846(16 genes,8 taxa):Brassica rapaBra028687
ORTHOMCL1846(16 genes,8 taxa):Vitis viniferaGSVIVT01013865001
ORTHOMCL1846(16 genes,8 taxa):Oryza sativaOs09t0121000-01
ORTHOMCL1846(16 genes,8 taxa):Oryza sativaOs09t0121050-00
ORTHOMCL1846(16 genes,8 taxa):Populus trichocarpaPOPTR_0003s10690.1
ORTHOMCL1846(16 genes,8 taxa):Populus trichocarpaPOPTR_0003s10700.1
ORTHOMCL1846(16 genes,8 taxa):Populus trichocarpaPOPTR_0003s10710.1
ORTHOMCL1846(16 genes,8 taxa):Sorghum bicolorSb02g019360.1
ORTHOMCL1846(16 genes,8 taxa):Carica papayaevm.TU.supercontig_121.1
ORTHOMCL1846(16 genes,8 taxa):Carica papayaevm.TU.supercontig_121.5
ORTHOMCL1846(16 genes,8 taxa):Carica papayaevm.TU.supercontig_1936.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:36584296..37496362 (-)A.thalianaChr5:2285040..2758362 (+)33
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:37106397..37398210 (+)B.rapaA10:3114880..3336658 (-)10
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G614602471407624721940Chr5Subgenome_III(LF)67
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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