Basic Information
Gene Model:Bol017004
Gene Family:Protein Kinase Gene Families
Chromosome:C07
Scaffold:Scaffold000150
Sequence:
 | 
Gene Structure
Nucleotide Length:3173 bp
Transcript Length:2379 bp
Protein Length:792 aa
Strand:+
Location:C07: 37382487 : 37385659
Gene CDSs(9): 1-189 | 293-1078 | 1160-1597 | 1689-1790 | 1870-2174 | 2358-2533 | 2621-2745 | 2840-2961 | 3038-3173 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00108PROTEIN_KINASE_ST 548 560 NAIPR008271Serine/threonine-protein kinase, active site
PatternScanPS00107PROTEIN_KINASE_ATP 431 452 NAIPR017441Protein kinase, ATP binding site
Gene3DG3DSA:3.30.40.10no description 724 778 0.00039Not foundNot found
Gene3DG3DSA:1.10.510.10no description 497 723 7.6e-37Not foundNot found
Gene3DG3DSA:3.30.200.20no description 406 497 2.5e-17Not foundNot found
HMMSmartSM00504no description 723 785 2.7e-21IPR003613U box domain
HMMSmartSM00220no description 425 687 3.4e-23IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 425 691 4.4e-14IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
Segsegseg 343 392 NANot foundNot found
Segsegseg 176 201 NANot foundNot found
HMMPfamPF04564U-box 719 792 3.5e-18IPR003613U box domain
HMMPfamPF00069Pkinase 425 630 6.5e-37IPR017442Serine/threonine-protein kinase-like domain
HMMPantherPTHR23258SERINE-THREONINE PRO 66 785 5.9e-225Not foundNot found
HMMPantherPTHR23258:SF447RECEPTOR-LIKE PROTEI 66 785 5.9e-225Not foundNot found
ProfileScanPS50011PROTEIN_KINASE_DOM 425 720 33.149IPR000719Protein kinase, catalytic domain
superfamilySSF57850RING/U-box 724 778 2.4e-15Not foundNot found
superfamilySSF56112Protein kinase-like 414 723 2.5e-62IPR011009Protein kinase-like domain
Coilcoilcoiled-coil 295 400 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
Q9FKG50.0PUB51_ARATH U-box domain-containing protein 51 OS=Arabidopsis thaliana GN=PUB51 PE=2 SV=2
TrEMBL
Best HitE_value Description
A5BC940.0A5BC94_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_021538 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G389902e-42K04733IRAK4interleukin-1 receptor-associated kinase 4
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL443(29 genes,8 taxa):Arabidopsis thalianaAT4G25160.1
ORTHOMCL443(29 genes,8 taxa):Arabidopsis thalianaAT5G51270.1
ORTHOMCL443(29 genes,8 taxa):Arabidopsis thalianaAT5G61550.1
ORTHOMCL443(29 genes,8 taxa):Arabidopsis thalianaAT5G61560.1
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol007790
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol017004
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol029350
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol029357
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol039498
ORTHOMCL443(29 genes,8 taxa):Brassica oleraceaBol045287
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra012943
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra012944
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra013868
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra015196
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra015198
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra019185
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra022543
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra029317
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra029318
ORTHOMCL443(29 genes,8 taxa):Brassica rapaBra035920
ORTHOMCL443(29 genes,8 taxa):Vitis viniferaGSVIVT01014020001
ORTHOMCL443(29 genes,8 taxa):Oryza sativaOs03t0101200-00
ORTHOMCL443(29 genes,8 taxa):Oryza sativaOs06t0140800-01
ORTHOMCL443(29 genes,8 taxa):Oryza sativaOs06t0140800-02
ORTHOMCL443(29 genes,8 taxa):Oryza sativaOs10t0561500-01
ORTHOMCL443(29 genes,8 taxa):Populus trichocarpaPOPTR_0004s24130.1
ORTHOMCL443(29 genes,8 taxa):Sorghum bicolorSb02g024310.1
ORTHOMCL443(29 genes,8 taxa):Sorghum bicolorSb10g002760.1
ORTHOMCL443(29 genes,8 taxa):Carica papayaevm.TU.supercontig_13.256
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:36584296..37496362 (-)A.thalianaChr5:2285040..2758362 (+)33
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:37106397..37398210 (+)B.rapaA10:3114880..3336658 (-)10
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G615602475286824756718Chr5Subgenome_III(LF)67
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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