Basic Information
Gene Model:Bol016939
Gene Family:FH2 protein (formin) Gene Family
Chromosome:C09
Scaffold:Scaffold000151
Sequence:
 | 
Gene Structure
Nucleotide Length:5848 bp
Transcript Length:3915 bp
Protein Length:1304 aa
Strand:+
Location:C09: 25803785 : 25809632
Gene CDSs(17): 1-239 | 342-408 | 494-562 | 850-966 | 1048-1119 | 1200-1294 | 1368-1449 | 1530-1580 | 1665-1745 | 1835-1876 | 2013-2111 | 2201-2272 | 2393-2507 | 2603-4320 | 4407-4628 | 4783-5483 | 5776-5848 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:2.60.40.1110no description 197 341 9e-11Not foundNot found
HMMSmartSM00498no description 867 1302 4.6e-61IPR003104Actin-binding FH2/DRF autoregulatory
superfamilySSF52799(Phosphotyrosine pro 12 189 1.1e-10Not foundNot found
superfamilySSF101447Formin homology 2 do 814 1257 1.6e-108IPR015425Actin-binding FH2
superfamilySSF49562C2 domain (Calcium/l 197 339 9.6e-25IPR008973C2 calcium/lipid-binding region, CaLB
ProfileScanPS51444FH2 867 1263 69.396IPR015425Actin-binding FH2
ProfileScanPS51182C2_TENSIN 199 338 30.628IPR014020Tensin phosphatase, C2 domain
HMMPfamPF10409PTEN_C2 197 337 6.7e-54IPR014020Tensin phosphatase, C2 domain
HMMPfamPF02181FH2 868 1238 3.4e-147IPR015425Actin-binding FH2
HMMPantherPTHR23213FORMIN-RELATED 47 1303 0Not foundNot found
HMMPantherPTHR23213:SF18FORMIN-RELATED 47 1303 0Not foundNot found
Coilcoilcoiled-coil 1238 1259 NANot foundNot found
Coilcoilcoiled-coil 1144 1165 NANot foundNot found
Segsegseg 1249 1262 NANot foundNot found
Segsegseg 748 775 NANot foundNot found
Segsegseg 787 819 NANot foundNot found
Segsegseg 825 851 NANot foundNot found
Segsegseg 725 736 NANot foundNot found
Segsegseg 695 716 NANot foundNot found
Segsegseg 531 552 NANot foundNot found
Segsegseg 675 687 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003779 Molecular Function actin binding
GO:0016043 Biological Process cellular component organization
GO:0030036 Biological Process actin cytoskeleton organization
Swiss-Prot
Best HitE_value Description
Q9LVN10.0FH13_ARATH Formin-like protein 13 OS=Arabidopsis thaliana GN=FH13 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9T3Z21e-179B9T3Z2_RICCO Actin binding protein, putative OS=Ricinus communis GN=RCOM_0639960 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_7441731e-126K04512DAAMdishevelled associated activator of morphogenesis
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL718(23 genes,8 taxa):Arabidopsis thalianaAT2G25050.1
ORTHOMCL718(23 genes,8 taxa):Arabidopsis thalianaAT3G32400.1
ORTHOMCL718(23 genes,8 taxa):Arabidopsis thalianaAT5G58160.1
ORTHOMCL718(23 genes,8 taxa):Brassica oleraceaBol015556
ORTHOMCL718(23 genes,8 taxa):Brassica oleraceaBol015557
ORTHOMCL718(23 genes,8 taxa):Brassica oleraceaBol016939
ORTHOMCL718(23 genes,8 taxa):Brassica oleraceaBol045762
ORTHOMCL718(23 genes,8 taxa):Brassica rapaBra002668
ORTHOMCL718(23 genes,8 taxa):Brassica rapaBra007822
ORTHOMCL718(23 genes,8 taxa):Brassica rapaBra020385
ORTHOMCL718(23 genes,8 taxa):Brassica rapaBra020386
ORTHOMCL718(23 genes,8 taxa):Vitis viniferaGSVIVT01003875001
ORTHOMCL718(23 genes,8 taxa):Vitis viniferaGSVIVT01035957001
ORTHOMCL718(23 genes,8 taxa):Oryza sativaOs08t0280200-01
ORTHOMCL718(23 genes,8 taxa):Oryza sativaOs08t0280200-02
ORTHOMCL718(23 genes,8 taxa):Populus trichocarpaPOPTR_0006s19930.1
ORTHOMCL718(23 genes,8 taxa):Populus trichocarpaPOPTR_0006s27960.1
ORTHOMCL718(23 genes,8 taxa):Populus trichocarpaPOPTR_0018s02490.1
ORTHOMCL718(23 genes,8 taxa):Populus trichocarpaPOPTR_0018s02490.2
ORTHOMCL718(23 genes,8 taxa):Populus trichocarpaPOPTR_0018s11740.1
ORTHOMCL718(23 genes,8 taxa):Sorghum bicolorSb07g012920.1
ORTHOMCL718(23 genes,8 taxa):Carica papayaevm.TU.supercontig_127.25
ORTHOMCL718(23 genes,8 taxa):Carica papayaevm.TU.supercontig_127.26
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)A.thalianaChr5:23144980..24273634 (+)179
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)B.rapaA10:8333857..9765254 (-)184
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G581602353370123539465Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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