Basic Information
Gene Model:Bol016881
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000151
Sequence:
 | 
Gene Structure
Nucleotide Length:5625 bp
Transcript Length:2967 bp
Protein Length:988 aa
Strand:-
Location:C09: 26305189 : 26310813
Gene CDSs(14): 1-536 | 642-884 | 948-1027 | 1157-1233 | 1371-1618 | 1715-1801 | 1908-2007 | 2095-2308 | 2403-2592 | 4021-4368 | 4524-4695 | 4778-4956 | 5041-5199 | 5292-5625 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.30.40.10no description 198 249 2.8e-07Not foundNot found
superfamilySSF57903FYVE/PHD zinc finger 214 254 4.1e-07IPR011011Zinc finger, FYVE/PHD-type
Segsegseg 930 940 NANot foundNot found
Segsegseg 885 890 NANot foundNot found
Segsegseg 601 622 NANot foundNot found
Segsegseg 517 530 NANot foundNot found
Segsegseg 123 137 NANot foundNot found
HMMPantherPTHR13712:SF22PHD ZINC FINGER-CONT 53 249 0.00059Not foundNot found
HMMPantherPTHR13712RING FINGER-CONTAINI 53 249 0.00059Not foundNot found
HMMPfamPF03005DUF231 817 986 6e-75IPR004253Protein of unknown function DUF231, plant
HMMPfamPF00628PHD 224 251 1e-10IPR019787Zinc finger, PHD-finger
Gene Ontology
GO TermGO TypeDescription
GO:0008270 Molecular Function zinc ion binding
Swiss-Prot
Best HitE_value Description

Note: best hit of this gene was not detected in Swiss-Prot database.

TrEMBL
Best HitE_value Description
Q9LUZ50.0Q9LUZ5_ARATH Gb|AAC80581.1 OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pif:PITG_009824e-07K11655BAZ1A, ACF1bromodomain adjacent to zinc finger domain protein 1A
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8681(9 genes,8 taxa):Arabidopsis thalianaAT5G58600.1
ORTHOMCL8681(9 genes,8 taxa):Brassica oleraceaBol016881
ORTHOMCL8681(9 genes,8 taxa):Brassica rapaBra002634
ORTHOMCL8681(9 genes,8 taxa):Vitis viniferaGSVIVT01024714001
ORTHOMCL8681(9 genes,8 taxa):Oryza sativaOs03t0290900-01
ORTHOMCL8681(9 genes,8 taxa):Populus trichocarpaPOPTR_0001s28490.1
ORTHOMCL8681(9 genes,8 taxa):Populus trichocarpaPOPTR_0009s07700.1
ORTHOMCL8681(9 genes,8 taxa):Sorghum bicolorSb01g038480.1
ORTHOMCL8681(9 genes,8 taxa):Carica papayaevm.TU.supercontig_2.411
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)A.thalianaChr5:23144980..24273634 (+)179
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)B.rapaA10:8333857..9765254 (-)184
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G586002368379123685715Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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