Basic Information
Gene Model:Bol016824
Gene Family:Not classificated
Chromosome:C09
Scaffold:Scaffold000151
Sequence:
 | 
Gene Structure
Nucleotide Length:1860 bp
Transcript Length:1242 bp
Protein Length:413 aa
Strand:+
Location:C09: 26906507 : 26908366
Gene CDSs(4): 1-350 | 492-597 | 990-1295 | 1381-1860 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Gene3DG3DSA:3.60.40.10no description 109 413 6.4e-74IPR001932Protein phosphatase 2C-related
HMMPfamPF00481PP2C 111 402 4.9e-70IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 396 412 NANot foundNot found
Segsegseg 11 49 NANot foundNot found
Segsegseg 362 377 NANot foundNot found
HMMSmartSM00332no description 102 407 8.7e-95IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 91 410 2.9e-75IPR001932Protein phosphatase 2C-related
HMMPantherPTHR13832PROTEIN PHOSPHATASE 95 411 2.3e-127IPR015655Protein phosphatase 2C
HMMPantherPTHR13832:SF87PROTEIN PHOSPHATASE 95 411 2.3e-127Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9FIF51e-166P2C78_ARATH Probable protein phosphatase 2C 78 OS=Arabidopsis thaliana GN=At5g59220 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q8RVG01e-126Q8RVG0_TOBAC Protein phosphatase 2C OS=Nicotiana tabacum GN=pp2C PE=2 SV=2
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G592201e-166K14497PP2Cprotein phosphatase 2C
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19545(3 genes,3 taxa):Arabidopsis thalianaAT5G59220.1
ORTHOMCL19545(3 genes,3 taxa):Brassica oleraceaBol016824
ORTHOMCL19545(3 genes,3 taxa):Brassica rapaBra002594
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:26855667..27038085 (-)A.thalianaChr5:23833728..23906977 (+)12
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC09:24840204..28283433 (+)B.rapaA10:8333857..9765254 (-)184
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G592202389440423896619Chr5Subgenome_III(LF)311
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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