Basic Information
Gene Model:Bol016786
Gene Family:Protein Kinase Gene Families
Chromosome:C06
Scaffold:Scaffold000152_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2981 bp
Transcript Length:1491 bp
Protein Length:496 aa
Strand:-
Location:C06: 25448754 : 25451734
Gene CDSs(8): 1-79 | 590-1147 | 1587-1877 | 2037-2298 | 2405-2457 | 2539-2606 | 2729-2818 | 2892-2981 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00220no description 328 493 7.6e-10IPR002290Serine/threonine-protein kinase domain
HMMSmartSM00219no description 328 495 1e-11IPR020635Tyrosine-protein kinase, subgroup, catalytic domain
ProfileScanPS50011PROTEIN_KINASE_DOM 328 496 30.068IPR000719Protein kinase, catalytic domain
superfamilySSF56112Protein kinase-like 298 496 8.2e-58IPR011009Protein kinase-like domain
HMMPantherPTHR23258SERINE-THREONINE PRO 176 496 1.6e-170Not foundNot found
HMMPantherPTHR23258:SF429SERINE/THREONINE REC 176 496 1.6e-170Not foundNot found
HMMPfamPF07714Pkinase_Tyr 329 474 2.5e-38IPR001245Tyrosine-protein kinase, catalytic domain
PatternScanPS00107PROTEIN_KINASE_ATP 334 356 NAIPR017441Protein kinase, ATP binding site
PatternScanPS00108PROTEIN_KINASE_ST 448 460 NAIPR008271Serine/threonine-protein kinase, active site
Segsegseg 7 16 NANot foundNot found
Segsegseg 234 246 NANot foundNot found
Gene3DG3DSA:1.10.510.10no description 406 496 9.1e-26Not foundNot found
Gene3DG3DSA:3.30.200.20no description 319 403 1.3e-22Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004672 Molecular Function protein kinase activity
GO:0004674 Molecular Function protein serine/threonine kinase activity
GO:0004713 Molecular Function protein tyrosine kinase activity
GO:0005524 Molecular Function ATP binding
GO:0006468 Biological Process protein phosphorylation
Swiss-Prot
Best HitE_value Description
C0LGD72e-47Y1684_ARATH Probable LRR receptor-like serine/threonine-protein kinase At1g06840 OS=Arabidopsis thaliana GN=At1g06840 PE=1 SV=2
TrEMBL
Best HitE_value Description
Q9FX990.0Q9FX99_ARATH F14J22.6 protein OS=Arabidopsis thaliana GN=At1g49730 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
zma:1002830911e-41K13430PBS1serine/threonine-protein kinase PBS1
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3564(12 genes,8 taxa):Arabidopsis thalianaAT1G49730.1
ORTHOMCL3564(12 genes,8 taxa):Arabidopsis thalianaAT3G19300.1
ORTHOMCL3564(12 genes,8 taxa):Brassica oleraceaBol016786
ORTHOMCL3564(12 genes,8 taxa):Brassica oleraceaBol018083
ORTHOMCL3564(12 genes,8 taxa):Brassica rapaBra018799
ORTHOMCL3564(12 genes,8 taxa):Brassica rapaBra022410
ORTHOMCL3564(12 genes,8 taxa):Vitis viniferaGSVIVT01031722001
ORTHOMCL3564(12 genes,8 taxa):Oryza sativaOs04t0689400-01
ORTHOMCL3564(12 genes,8 taxa):Populus trichocarpaPOPTR_0009s10330.1
ORTHOMCL3564(12 genes,8 taxa):Sorghum bicolorSb06g016830.1
ORTHOMCL3564(12 genes,8 taxa):Sorghum bicolorSb06g033890.1
ORTHOMCL3564(12 genes,8 taxa):Carica papayaevm.TU.supercontig_1524.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:25310744..26474856 (-)A.thalianaChr1:17995948..18484233 (+)30
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:25389765..26455313 (+)B.rapaA08:16009009..16541549 (-)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G497301840250618405563Chr1Subgenome_III(LF)69
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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