Basic Information
Gene Model:Bol016780
Gene Family:Transcription Factor Families
Chromosome:C06
Scaffold:Scaffold000152_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:2942 bp
Transcript Length:903 bp
Protein Length:300 aa
Strand:+
Location:C06: 25534157 : 25537098
Gene CDSs(3): 1-105 | 193-672 | 2625-2942 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00353no description 81 129 6.5e-08IPR001092Basic helix-loop-helix dimerisation region bHLH
HMMPfamPF00010HLH 74 124 8.8e-09IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene3DG3DSA:4.10.280.10no description 69 134 4.4e-07IPR011598Helix-loop-helix DNA-binding
HMMPantherPTHR23042CIRCADIAN PROTEIN CL 81 126 3.1e-05Not foundNot found
superfamilySSF47459HLH, helix-loop-heli 63 134 9.9e-14IPR011598Helix-loop-helix DNA-binding
Coilcoilcoiled-coil 113 134 NANot foundNot found
Segsegseg 141 158 NANot foundNot found
Segsegseg 52 67 NANot foundNot found
Segsegseg 123 139 NANot foundNot found
Segsegseg 34 44 NANot foundNot found
Segsegseg 17 27 NANot foundNot found
ProfileScanPS50888HLH 59 124 10.393IPR001092Basic helix-loop-helix dimerisation region bHLH
Gene Ontology
GO TermGO TypeDescription
GO:0005634 Cellular Component nucleus
GO:0030528 Molecular Function transcription regulator activity
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9FXA31e-116BH095_ARATH Transcription factor bHLH95 OS=Arabidopsis thaliana GN=BHLH95 PE=2 SV=2
TrEMBL
Best HitE_value Description
A5B4T96e-55A5B4T9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026442 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1694(16 genes,8 taxa):Arabidopsis thalianaAT1G49770.1
ORTHOMCL1694(16 genes,8 taxa):Brassica oleraceaBol007838
ORTHOMCL1694(16 genes,8 taxa):Brassica oleraceaBol016780
ORTHOMCL1694(16 genes,8 taxa):Brassica rapaBra018796
ORTHOMCL1694(16 genes,8 taxa):Brassica rapaBra040671
ORTHOMCL1694(16 genes,8 taxa):Vitis viniferaGSVIVT01009469001
ORTHOMCL1694(16 genes,8 taxa):Vitis viniferaGSVIVT01031718001
ORTHOMCL1694(16 genes,8 taxa):Oryza sativaOs04t0429400-01
ORTHOMCL1694(16 genes,8 taxa):Populus trichocarpaPOPTR_0001s31250.1
ORTHOMCL1694(16 genes,8 taxa):Populus trichocarpaPOPTR_0014s02600.1
ORTHOMCL1694(16 genes,8 taxa):Sorghum bicolorSb04g022260.1
ORTHOMCL1694(16 genes,8 taxa):Sorghum bicolorSb04g022270.1
ORTHOMCL1694(16 genes,8 taxa):Sorghum bicolorSb06g016740.1
ORTHOMCL1694(16 genes,8 taxa):Sorghum bicolorSb07g002200.1
ORTHOMCL1694(16 genes,8 taxa):Sorghum bicolorSb07g002210.1
ORTHOMCL1694(16 genes,8 taxa):Carica papayaevm.TU.supercontig_21.174
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:25310744..26474856 (-)A.thalianaChr1:17995948..18484233 (+)30
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:25389765..26455313 (+)B.rapaA08:16009009..16541549 (-)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
CAT1G497701842457818426782Chr1Subgenome_III(LF)69
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


logo