Basic Information
Gene Model:Bol016647
Gene Family:Protein tyrosine phosphatase (PTP) family
Chromosome:Cun
Scaffold:Scaffold000153
Sequence:
 | 
Gene Structure
Nucleotide Length:1869 bp
Transcript Length:1869 bp
Protein Length:622 aa
Strand:-
Location:Scaffold000153: 606875 : 608743
Gene CDSs(1): 1-1869 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50056TYR_PHOSPHATASE_2 139 208 12.893IPR000387Dual-specific/protein-tyrosine phosphatase, conserved region
superfamilySSF50249Nucleic acid-binding 491 608 6.5e-24IPR016027Nucleic acid-binding, OB-fold-like
superfamilySSF56091DNA ligase/mRNA capp 247 492 6.4e-51Not foundNot found
superfamilySSF52799(Phosphotyrosine pro 41 236 9.5e-43Not foundNot found
HMMPfamPF03919mRNA_cap_C 491 590 1.2e-28IPR013846mRNA capping enzyme, C-terminal
HMMPfamPF01331mRNA_cap_enzyme 297 490 5.8e-140IPR001339mRNA capping enzyme
HMMPfamPF00782DSPc 154 216 2.2e-07IPR000340Dual specificity phosphatase, catalytic domain
Gene3DG3DSA:3.90.190.10no description 37 237 2.7e-52Not foundNot found
Gene3DG3DSA:2.40.50.140no description 492 581 0.00029IPR012340Nucleic acid-binding, OB-fold
PatternScanPS00383TYR_PHOSPHATASE_1 160 170 NAIPR016130Protein-tyrosine phosphatase, active site
Segsegseg 233 250 NANot foundNot found
HMMPIRPIRSF036958mRNA capping enzyme, 3 618 3.2e-282IPR017074mRNA capping enzyme, bifunctional
HMMPantherPTHR10367MRNA CAPPING ENZYME 37 622 1.1e-165Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0004484 Molecular Function mRNA guanylyltransferase activity
GO:0004651 Molecular Function polynucleotide 5'-phosphatase activity
GO:0004725 Molecular Function protein tyrosine phosphatase activity
GO:0005634 Cellular Component nucleus
GO:0006370 Biological Process mRNA capping
GO:0006397 Biological Process mRNA processing
GO:0006470 Biological Process protein dephosphorylation
GO:0008138 Molecular Function protein tyrosine/serine/threonine phosphatase activity
GO:0016311 Biological Process dephosphorylation
GO:0016791 Molecular Function phosphatase activity
Swiss-Prot
Best HitE_value Description
O552361e-70MCE1_MOUSE mRNA-capping enzyme OS=Mus musculus GN=Rngtt PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9S9L30.0Q9S9L3_ARATH F26C17.2 protein OS=Arabidopsis thaliana GN=At5g28210 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G282100.0K13917RNGTT--
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT3G09100.2
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT5G01290.1
ORTHOMCL2075(15 genes,8 taxa):Arabidopsis thalianaAT5G28210.1
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol005693
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol011288
ORTHOMCL2075(15 genes,8 taxa):Brassica oleraceaBol016647
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra005691
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra009992
ORTHOMCL2075(15 genes,8 taxa):Brassica rapaBra029747
ORTHOMCL2075(15 genes,8 taxa):Vitis viniferaGSVIVT01034015001
ORTHOMCL2075(15 genes,8 taxa):Oryza sativaOs12t0193200-01
ORTHOMCL2075(15 genes,8 taxa):Populus trichocarpaPOPTR_0006s09720.1
ORTHOMCL2075(15 genes,8 taxa):Populus trichocarpaPOPTR_0016s11810.1
ORTHOMCL2075(15 genes,8 taxa):Sorghum bicolorSb05g008670.1
ORTHOMCL2075(15 genes,8 taxa):Carica papayaevm.TU.supercontig_56.91
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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