Basic Information
Gene Model:Bol016607
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000153
Sequence:
 | 
Gene Structure
Nucleotide Length:429 bp
Transcript Length:429 bp
Protein Length:142 aa
Strand:-
Location:Scaffold000153: 282874 : 283302
Gene CDSs(1): 1-429 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00036BZIP_BASIC 19 34 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 39 81 NANot foundNot found
HMMSmartSM00338no description 12 76 2e-07IPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF07716bZIP_2 12 66 0.0025IPR011700Basic leucine zipper
ProfileScanPS50217BZIP 14 77 8.933IPR004827Basic-leucine zipper (bZIP) transcription factor
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0005634 Cellular Component nucleus
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
P240684e-07OCS1_MAIZE Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q9FGX29e-58Q9FGX2_ARATH Similarity to bZIP transcription factor OS=Arabidopsis thaliana GN=At5g49450 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
vvi:1002540831e-09K04371ERK1_2extracellular signal-regulated kinase 1/2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL12089(7 genes,5 taxa):Arabidopsis thalianaAT5G49450.1
ORTHOMCL12089(7 genes,5 taxa):Brassica oleraceaBol016607
ORTHOMCL12089(7 genes,5 taxa):Brassica oleraceaBol032354
ORTHOMCL12089(7 genes,5 taxa):Brassica rapaBra010035
ORTHOMCL12089(7 genes,5 taxa):Populus trichocarpaPOPTR_0008s10620.1
ORTHOMCL12089(7 genes,5 taxa):Populus trichocarpaPOPTR_0010s15280.1
ORTHOMCL12089(7 genes,5 taxa):Carica papayaevm.TU.supercontig_9.71
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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