Basic Information
Gene Model:Bol016594
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000153
Sequence:
 | 
Gene Structure
Nucleotide Length:1079 bp
Transcript Length:864 bp
Protein Length:287 aa
Strand:+
Location:Scaffold000153: 155810 : 156888
Gene CDSs(3): 1-178 | 313-465 | 547-1079 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00072Response_reg 36 147 1.5e-05IPR001789Signal transduction response regulator, receiver region
Segsegseg 161 175 NANot foundNot found
Segsegseg 98 117 NANot foundNot found
HMMPantherPTHR23283SENSOR HISTIDINE KIN 32 154 8.8e-07Not foundNot found
HMMSmartSM00448no description 34 146 0.0002IPR001789Signal transduction response regulator, receiver region
ProfileScanPS50110RESPONSE_REGULATORY 35 150 18.565IPR001789Signal transduction response regulator, receiver region
Gene3DG3DSA:3.40.50.2300no description 35 163 1.1e-13Not foundNot found
superfamilySSF52172CheY-like 31 157 2.3e-21IPR011006CheY-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9FJ161e-71APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis thaliana GN=APRR4 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9T4M71e-31B9T4M7_RICCO Two-component sensor histidine kinase bacteria, putative OS=Ricinus communis GN=RCOM_0053570 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G492402e-71K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24872(2 genes,2 taxa):Brassica oleraceaBol016594
ORTHOMCL24872(2 genes,2 taxa):Brassica rapaBra037427
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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