Basic Information
Gene Model:Bol016572
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000154
Sequence:
 | 
Gene Structure
Nucleotide Length:1020 bp
Transcript Length:1020 bp
Protein Length:339 aa
Strand:-
Location:C02: 24904629 : 24905648
Gene CDSs(1): 1-1020 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF02362B3 35 147 4.8e-35IPR003340Transcriptional factor B3
Segsegseg 21 28 NANot foundNot found
Segsegseg 239 259 NANot foundNot found
Segsegseg 275 286 NANot foundNot found
ProfileScanPS50863B3 36 145 14.071IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 23 157 1.6e-35Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
O825951e-122NGA4_ARATH B3 domain-containing transcription factor NGA4 OS=Arabidopsis thaliana GN=NGA4 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_8140484e-37K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL18745(3 genes,3 taxa):Arabidopsis thalianaAT4G01500.1
ORTHOMCL18745(3 genes,3 taxa):Brassica oleraceaBol016572
ORTHOMCL18745(3 genes,3 taxa):Brassica rapaBra008552
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
OAT4G01500639247640940Chr4Subgenome_II42
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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