Basic Information
Gene Model:Bol016537
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000154
Sequence:
 | 
Gene Structure
Nucleotide Length:2241 bp
Transcript Length:1320 bp
Protein Length:439 aa
Strand:-
Location:C02: 24479867 : 24482107
Gene CDSs(8): 1-261 | 371-462 | 523-615 | 704-871 | 960-1082 | 1155-1292 | 1363-1738 | 2173-2241 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 8 103 13.704IPR003340Transcriptional factor B3
Segsegseg 257 279 NANot foundNot found
Segsegseg 233 240 NANot foundNot found
Segsegseg 156 163 NANot foundNot found
Gene3DG3DSA:2.40.330.10no description 2 105 8.3e-28Not foundNot found
HMMPfamPF02362B3 9 105 2.8e-22IPR003340Transcriptional factor B3
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q9SZ052e-99Y3440_ARATH B3 domain-containing protein At4g34400 OS=Arabidopsis thaliana GN=At4g34400 PE=2 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19047(3 genes,3 taxa):Arabidopsis thalianaAT4G34400.1
ORTHOMCL19047(3 genes,3 taxa):Brassica oleraceaBol016537
ORTHOMCL19047(3 genes,3 taxa):Brassica rapaBra018530
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:24200586..24497564 (+)A.thalianaChr4:1092002..1209287 (+)16
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:24200586..24497564 (+)B.rapaA05:16649013..16762150 (-)16
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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