Basic Information
Gene Model:Bol016452
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000155
Sequence:
 | 
Gene Structure
Nucleotide Length:2074 bp
Transcript Length:1530 bp
Protein Length:509 aa
Strand:+
Location:C02: 43678946 : 43681019
Gene CDSs(6): 1-229 | 443-604 | 693-976 | 1064-1308 | 1388-1886 | 1964-2074 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00448no description 51 166 1.6e-25IPR001789Signal transduction response regulator, receiver region
Segsegseg 4 17 NANot foundNot found
Segsegseg 391 408 NANot foundNot found
HMMPfamPF00072Response_reg 53 167 3.6e-24IPR001789Signal transduction response regulator, receiver region
HMMPfamPF06203CCT 454 498 4.2e-23IPR010402CCT domain
Gene3DG3DSA:3.40.50.2300no description 51 183 2.3e-25Not foundNot found
ProfileScanPS51017CCT 454 496 15.497IPR010402CCT domain
ProfileScanPS50110RESPONSE_REGULATORY 52 170 28.251IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 52 175 2.8e-17Not foundNot found
HMMPantherPTHR23283:SF47SENSORY TRANSDUCTION 52 175 2.8e-17Not foundNot found
superfamilySSF52172CheY-like 50 177 1.4e-29IPR011006CheY-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q6LA420.0APRR5_ARATH Two-component response regulator-like APRR5 OS=Arabidopsis thaliana GN=APRR5 PE=1 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G244700.0K12130APRR5pseudo-response regulator 5
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2679(14 genes,7 taxa):Arabidopsis thalianaAT5G24470.1
ORTHOMCL2679(14 genes,7 taxa):Brassica oleraceaBol016452
ORTHOMCL2679(14 genes,7 taxa):Brassica oleraceaBol022421
ORTHOMCL2679(14 genes,7 taxa):Brassica oleraceaBol036197
ORTHOMCL2679(14 genes,7 taxa):Brassica rapaBra009768
ORTHOMCL2679(14 genes,7 taxa):Brassica rapaBra029407
ORTHOMCL2679(14 genes,7 taxa):Brassica rapaBra036517
ORTHOMCL2679(14 genes,7 taxa):Vitis viniferaGSVIVT01038647001
ORTHOMCL2679(14 genes,7 taxa):Oryza sativaOs09t0532400-01
ORTHOMCL2679(14 genes,7 taxa):Oryza sativaOs09t0532400-02
ORTHOMCL2679(14 genes,7 taxa):Populus trichocarpaPOPTR_0012s00600.1
ORTHOMCL2679(14 genes,7 taxa):Populus trichocarpaPOPTR_0012s00600.2
ORTHOMCL2679(14 genes,7 taxa):Populus trichocarpaPOPTR_0015s00440.1
ORTHOMCL2679(14 genes,7 taxa):Carica papayaevm.TU.supercontig_3.156
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:42613211..44030988 (-)A.thalianaChr5:8076329..9087372 (+)60
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:42613211..44030988 (+)B.rapaA06:11498347..12603803 (-)46
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2447083559518358873Chr5Subgenome_II55
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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