Basic Information
Gene Model:Bol016432
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000155
Sequence:
 | 
Gene Structure
Nucleotide Length:1208 bp
Transcript Length:870 bp
Protein Length:289 aa
Strand:-
Location:C02: 43544737 : 43545944
Gene CDSs(5): 1-384 | 445-520 | 601-772 | 854-944 | 1062-1208 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00036BZIP_BASIC 136 151 NAIPR004827Basic-leucine zipper (bZIP) transcription factor
HMMPfamPF00170bZIP_1 129 177 5.7e-15IPR011616bZIP transcription factor, bZIP-1
HMMPantherPTHR22952CAMP-RESPONSE ELEMEN 131 174 9.2e-05Not foundNot found
HMMPantherPTHR22952:SF6CAMP-RESPONSE ELEMEN 131 174 9.2e-05Not foundNot found
Segsegseg 216 230 NANot foundNot found
Segsegseg 18 28 NANot foundNot found
HMMSmartSM00338no description 129 193 1.7e-14IPR004827Basic-leucine zipper (bZIP) transcription factor
ProfileScanPS50217BZIP 131 177 10.358IPR004827Basic-leucine zipper (bZIP) transcription factor
Coilcoilcoiled-coil 142 170 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0043565 Molecular Function sequence-specific DNA binding
GO:0046983 Molecular Function protein dimerization activity
Swiss-Prot
Best HitE_value Description
Q990902e-16CPRF2_PETCR Light-inducible protein CPRF2 OS=Petroselinum crispum GN=CPRF2 PE=2 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL8502(9 genes,8 taxa):Arabidopsis thalianaAT5G24800.1
ORTHOMCL8502(9 genes,8 taxa):Brassica oleraceaBol016432
ORTHOMCL8502(9 genes,8 taxa):Brassica rapaBra020471
ORTHOMCL8502(9 genes,8 taxa):Vitis viniferaGSVIVT01035557001
ORTHOMCL8502(9 genes,8 taxa):Oryza sativaOs02t0175100-01
ORTHOMCL8502(9 genes,8 taxa):Oryza sativaOs02t0266800-01
ORTHOMCL8502(9 genes,8 taxa):Populus trichocarpaPOPTR_0006s29250.1
ORTHOMCL8502(9 genes,8 taxa):Sorghum bicolorSb04g005020.1
ORTHOMCL8502(9 genes,8 taxa):Carica papayaevm.TU.supercontig_244.3
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:43114034..43590061 (-)A.thalianaChr5:3347421..3654202 (+)13
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:42613211..44030988 (+)B.rapaA06:11498347..12603803 (-)46
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2480085152008516669Chr5Subgenome_II55
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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