Basic Information
Gene Model:Bol016414
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000155
Sequence:
 | 
Gene Structure
Nucleotide Length:681 bp
Transcript Length:555 bp
Protein Length:184 aa
Strand:+
Location:C02: 43378362 : 43379042
Gene CDSs(2): 1-83 | 210-681 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS51032AP2_ERF 7 64 20.284IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMSmartSM00380no description 7 70 1.4e-36IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
Segsegseg 40 52 NANot foundNot found
Gene3DG3DSA:3.30.730.10no description 6 67 6.3e-21IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
HMMPfamPF00847AP2 6 57 2.4e-17IPR001471Pathogenesis-related transcriptional factor/ERF, DNA-binding
superfamilySSF54171DNA-binding domain 6 67 8.1e-21IPR016177DNA-binding, integrase-type
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0003700 Molecular Function sequence-specific DNA binding transcription factor activity
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q94AW54e-72ERF03_ARATH Ethylene-responsive transcription factor ERF003 OS=Arabidopsis thaliana GN=ERF003 PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
rcu:RCOM_05464502e-18K09286EREBPEREBP-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL2682(14 genes,8 taxa):Arabidopsis thalianaAT5G25190.1
ORTHOMCL2682(14 genes,8 taxa):Brassica oleraceaBol016414
ORTHOMCL2682(14 genes,8 taxa):Brassica rapaBra020490
ORTHOMCL2682(14 genes,8 taxa):Vitis viniferaGSVIVT01035911001
ORTHOMCL2682(14 genes,8 taxa):Oryza sativaOs02t0797100-00
ORTHOMCL2682(14 genes,8 taxa):Oryza sativaOs06t0181700-01
ORTHOMCL2682(14 genes,8 taxa):Populus trichocarpaPOPTR_0001s14720.1
ORTHOMCL2682(14 genes,8 taxa):Populus trichocarpaPOPTR_0003s17830.1
ORTHOMCL2682(14 genes,8 taxa):Populus trichocarpaPOPTR_0006s27710.1
ORTHOMCL2682(14 genes,8 taxa):Populus trichocarpaPOPTR_0018s02280.1
ORTHOMCL2682(14 genes,8 taxa):Sorghum bicolorSb04g036020.1
ORTHOMCL2682(14 genes,8 taxa):Sorghum bicolorSb10g005520.1
ORTHOMCL2682(14 genes,8 taxa):Carica papayaevm.TU.supercontig_10.100
ORTHOMCL2682(14 genes,8 taxa):Carica papayaevm.TU.supercontig_127.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:43114034..43590061 (-)A.thalianaChr5:3347421..3654202 (+)13
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:42997976..43522929 (+)B.rapaA09:7804229..7945669 (-)13
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
QAT5G2519087067908707748Chr5Subgenome_II55
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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