Basic Information
Gene Model:Bol016347
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000156_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2328 bp
Transcript Length:2160 bp
Protein Length:719 aa
Strand:+
Location:Scaffold000156_P2: 281312 : 283639
Gene CDSs(3): 1-171 | 266-373 | 448-2328 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR22849WDSAM1 PROTEIN 234 313 1.4e-08Not foundNot found
HMMSmartSM00504no description 235 298 4.7e-27IPR003613U box domain
HMMPfamPF04564U-box 236 305 1.2e-19IPR003613U box domain
Gene3DG3DSA:3.30.40.10no description 228 305 5.9e-22Not foundNot found
Gene3DG3DSA:1.25.10.10no description 398 668 2.3e-06IPR011989Armadillo-like helical
Segsegseg 657 673 NANot foundNot found
Segsegseg 712 718 NANot foundNot found
Segsegseg 335 355 NANot foundNot found
Segsegseg 484 500 NANot foundNot found
Segsegseg 504 520 NANot foundNot found
Segsegseg 636 648 NANot foundNot found
Segsegseg 35 46 NANot foundNot found
Segsegseg 103 113 NANot foundNot found
Segsegseg 179 188 NANot foundNot found
Segsegseg 223 232 NANot foundNot found
PatternScanPS00152ATPASE_ALPHA_BETA 206 215 NAIPR020003ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain, active site
superfamilySSF57850RING/U-box 215 301 1.5e-12Not foundNot found
superfamilySSF48371ARM repeat 272 666 2.1e-25IPR016024Armadillo-type fold
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0015986 Biological Process ATP synthesis coupled proton transport
GO:0016567 Biological Process protein ubiquitination
GO:0016820 Molecular Function hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances
GO:0033178 Cellular Component proton-transporting two-sector ATPase complex, catalytic domain
Swiss-Prot
Best HitE_value Description
O232250.0PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1378(18 genes,8 taxa):Arabidopsis thalianaAT4G36550.1
ORTHOMCL1378(18 genes,8 taxa):Brassica oleraceaBol016339
ORTHOMCL1378(18 genes,8 taxa):Brassica oleraceaBol016347
ORTHOMCL1378(18 genes,8 taxa):Brassica oleraceaBol028991
ORTHOMCL1378(18 genes,8 taxa):Brassica rapaBra010551
ORTHOMCL1378(18 genes,8 taxa):Brassica rapaBra010559
ORTHOMCL1378(18 genes,8 taxa):Brassica rapaBra011690
ORTHOMCL1378(18 genes,8 taxa):Vitis viniferaGSVIVT01018943001
ORTHOMCL1378(18 genes,8 taxa):Oryza sativaOs02t0705600-01
ORTHOMCL1378(18 genes,8 taxa):Oryza sativaOs02t0705600-02
ORTHOMCL1378(18 genes,8 taxa):Oryza sativaOs02t0705600-03
ORTHOMCL1378(18 genes,8 taxa):Oryza sativaOs06t0480000-01
ORTHOMCL1378(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s12380.1
ORTHOMCL1378(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s13010.1
ORTHOMCL1378(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s13010.2
ORTHOMCL1378(18 genes,8 taxa):Sorghum bicolorSb04g030520.1
ORTHOMCL1378(18 genes,8 taxa):Sorghum bicolorSb10g015690.1
ORTHOMCL1378(18 genes,8 taxa):Carica papayaevm.TU.supercontig_6.127
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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