Basic Information
Gene Model:Bol016339
Gene Family:U-box Gene Family
Chromosome:Cun
Scaffold:Scaffold000156_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2470 bp
Transcript Length:2193 bp
Protein Length:730 aa
Strand:+
Location:Scaffold000156_P2: 219216 : 221685
Gene CDSs(3): 1-189 | 265-372 | 575-2470 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00504no description 239 302 4.7e-27IPR003613U box domain
HMMPantherPTHR22849WDSAM1 PROTEIN 233 317 7.9e-09Not foundNot found
Segsegseg 644 656 NANot foundNot found
Segsegseg 665 691 NANot foundNot found
Segsegseg 490 508 NANot foundNot found
Segsegseg 512 528 NANot foundNot found
Segsegseg 132 139 NANot foundNot found
Segsegseg 343 363 NANot foundNot found
Segsegseg 38 52 NANot foundNot found
Segsegseg 111 120 NANot foundNot found
superfamilySSF57850RING/U-box 217 302 3.8e-12Not foundNot found
superfamilySSF48371ARM repeat 276 674 1.2e-25IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.10no description 482 673 2.5e-05IPR011989Armadillo-like helical
Gene3DG3DSA:3.30.40.10no description 232 309 1.4e-23Not foundNot found
HMMPfamPF04564U-box 237 309 2.2e-21IPR003613U box domain
Coilcoilcoiled-coil 100 128 NANot foundNot found
Coilcoilcoiled-coil 662 683 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0000151 Cellular Component ubiquitin ligase complex
GO:0004842 Molecular Function ubiquitin-protein ligase activity
GO:0005488 Molecular Function binding
GO:0016567 Biological Process protein ubiquitination
Swiss-Prot
Best HitE_value Description
O232250.0PUB5_ARATH U-box domain-containing protein 5 OS=Arabidopsis thaliana GN=PUB5 PE=2 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
bmy:Bm1_258503e-06K10597UBE4B, UFD2ubiquitin conjugation factor E4 B
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1378(18 genes,8 taxa):Arabidopsis thalianaAT4G36550.1
ORTHOMCL1378(18 genes,8 taxa):Brassica oleraceaBol016339
ORTHOMCL1378(18 genes,8 taxa):Brassica oleraceaBol016347
ORTHOMCL1378(18 genes,8 taxa):Brassica oleraceaBol028991
ORTHOMCL1378(18 genes,8 taxa):Brassica rapaBra010551
ORTHOMCL1378(18 genes,8 taxa):Brassica rapaBra010559
ORTHOMCL1378(18 genes,8 taxa):Brassica rapaBra011690
ORTHOMCL1378(18 genes,8 taxa):Vitis viniferaGSVIVT01018943001
ORTHOMCL1378(18 genes,8 taxa):Oryza sativaOs02t0705600-01
ORTHOMCL1378(18 genes,8 taxa):Oryza sativaOs02t0705600-02
ORTHOMCL1378(18 genes,8 taxa):Oryza sativaOs02t0705600-03
ORTHOMCL1378(18 genes,8 taxa):Oryza sativaOs06t0480000-01
ORTHOMCL1378(18 genes,8 taxa):Populus trichocarpaPOPTR_0005s12380.1
ORTHOMCL1378(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s13010.1
ORTHOMCL1378(18 genes,8 taxa):Populus trichocarpaPOPTR_0007s13010.2
ORTHOMCL1378(18 genes,8 taxa):Sorghum bicolorSb04g030520.1
ORTHOMCL1378(18 genes,8 taxa):Sorghum bicolorSb10g015690.1
ORTHOMCL1378(18 genes,8 taxa):Carica papayaevm.TU.supercontig_6.127
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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