Basic Information
Gene Model:Bol016326
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000156_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:1897 bp
Transcript Length:1524 bp
Protein Length:507 aa
Strand:+
Location:Scaffold000156_P2: 109871 : 111767
Gene CDSs(2): 1-139 | 513-1897 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11600SUGAR TRANSPORTER 27 354 2.1e-176Not foundNot found
HMMPantherPTHR11600:SF85SUGAR TRANSPORTER 27 354 2.1e-176Not foundNot found
ProfileScanPS50850MFS 33 481 50.192Not foundNot found
PatternScanPS00216SUGAR_TRANSPORT_1 87 104 NAIPR005829Sugar transporter, conserved site
Segsegseg 456 469 NANot foundNot found
superfamilySSF103473MFS general substrat 1 489 2.1e-78IPR016196Major facilitator superfamily, general substrate transporter
HMMPfamPF00083Sugar_tr 33 492 3.2e-121IPR005828General substrate transporter
HMMTigrTIGR00879SP: MFS transporter, 1 488 1.3e-94IPR003663Sugar/inositol transporter
Gene Ontology
GO TermGO TypeDescription
GO:0005215 Molecular Function transporter activity
GO:0006810 Biological Process transport
GO:0016020 Cellular Component membrane
GO:0016021 Cellular Component integral to membrane
GO:0022891 Molecular Function substrate-specific transmembrane transporter activity
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q8GXR20.0PLT6_ARATH Probable polyol transporter 6 OS=Arabidopsis thaliana GN=PLT6 PE=2 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
osa:43362501e-61K08150SLC2A13, ITRMFS transporter, SP family, solute carrier family 2 (myo-inositol transporter), member 13
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1728(16 genes,8 taxa):Arabidopsis thalianaAT2G18480.1
ORTHOMCL1728(16 genes,8 taxa):Arabidopsis thalianaAT4G36670.1
ORTHOMCL1728(16 genes,8 taxa):Brassica oleraceaBol002201
ORTHOMCL1728(16 genes,8 taxa):Brassica oleraceaBol002204
ORTHOMCL1728(16 genes,8 taxa):Brassica oleraceaBol016326
ORTHOMCL1728(16 genes,8 taxa):Brassica oleraceaBol018653
ORTHOMCL1728(16 genes,8 taxa):Brassica oleraceaBol028979
ORTHOMCL1728(16 genes,8 taxa):Brassica rapaBra010567
ORTHOMCL1728(16 genes,8 taxa):Brassica rapaBra011699
ORTHOMCL1728(16 genes,8 taxa):Brassica rapaBra017771
ORTHOMCL1728(16 genes,8 taxa):Brassica rapaBra037218
ORTHOMCL1728(16 genes,8 taxa):Vitis viniferaGSVIVT01018988001
ORTHOMCL1728(16 genes,8 taxa):Oryza sativaOs10t0360100-01
ORTHOMCL1728(16 genes,8 taxa):Populus trichocarpaPOPTR_0007s12610.1
ORTHOMCL1728(16 genes,8 taxa):Sorghum bicolorSb09g022100.1
ORTHOMCL1728(16 genes,8 taxa):Carica papayaevm.TU.supercontig_1208.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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