Basic Information
Gene Model:Bol016234
Gene Family:Not classificated
Chromosome:C04
Scaffold:Scaffold000157_P2
Sequence:
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Gene Structure
Nucleotide Length:5638 bp
Transcript Length:1869 bp
Protein Length:622 aa
Strand:-
Location:C04: 6983019 : 6988656
Gene CDSs(3): 1-1638 | 4755-4880 | 5534-5638 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMSmartSM00490no description 422 505 1.4e-20IPR001650DNA/RNA helicase, C-terminal
HMMSmartSM00487no description 59 263 1.4e-29IPR014001DEAD-like helicase, N-terminal
superfamilySSF52540P-loop containing nu 15 260 1.8e-21Not foundNot found
superfamilySSF52540P-loop containing nu 378 542 5.5e-22Not foundNot found
HMMPfamPF00176SNF2_N 66 374 4.7e-51IPR000330SNF2-related
HMMPfamPF00271Helicase_C 427 505 1.4e-23IPR001650DNA/RNA helicase, C-terminal
HMMPantherPTHR10799ATP-DEPENDENT HELICA 2 567 1.5e-232Not foundNot found
HMMPantherPTHR10799:SF62DNA REPAIR HELICASE 2 567 1.5e-232Not foundNot found
ProfileScanPS51194HELICASE_CTER 397 548 14.438IPR001650DNA/RNA helicase, C-terminal
ProfileScanPS51192HELICASE_ATP_BIND_1 78 258 17.966IPR014021Helicase, superfamily 1/2, ATP-binding domain
Gene3DG3DSA:3.40.50.300no description 378 507 2.9e-05Not foundNot found
Segsegseg 106 121 NANot foundNot found
Segsegseg 8 16 NANot foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003676 Molecular Function nucleic acid binding
GO:0003677 Molecular Function DNA binding
GO:0004386 Molecular Function helicase activity
GO:0005524 Molecular Function ATP binding
Swiss-Prot
Best HitE_value Description
Q5NC056e-81TTF2_MOUSE Transcription termination factor 2 OS=Mus musculus GN=Ttf2 PE=1 SV=2
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description
pic:PICST_888247e-56K01509E3.6.1.3adenosinetriphosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19724(3 genes,2 taxa):Brassica oleraceaBol003300
ORTHOMCL19724(3 genes,2 taxa):Brassica oleraceaBol016234
ORTHOMCL19724(3 genes,2 taxa):Brassica rapaBra012172
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:6496341..7320585 (+)A.thalianaChr3:20278877..20698265 (+)18
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC04:3683395..7469282 (+)B.rapaA05:19820850..21759172 (-)222
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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