Basic Information
Gene Model:Bol016151
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000157_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:274 bp
Transcript Length:171 bp
Protein Length:56 aa
Strand:-
Location:C06: 4417369 : 4417642
Gene CDSs(2): 1-90 | 194-274 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR21659HYDROPHOBIC PROTEIN 1 56 4.6e-22IPR000612Uncharacterised protein family UPF0057
PatternScanPS01309UPF0057 10 25 NAIPR000612Uncharacterised protein family UPF0057
HMMPfamPF01679UPF0057 4 54 5.3e-24IPR000612Uncharacterised protein family UPF0057
Gene Ontology
GO TermGO TypeDescription
GO:0016021 Cellular Component integral to membrane
Swiss-Prot
Best HitE_value Description
Q9ZNS62e-18RCI2B_ARATH Hydrophobic protein RCI2B OS=Arabidopsis thaliana GN=RCI2B PE=2 SV=1
TrEMBL
Best HitE_value Description

Note: this gene was not detected its best hit in TrEMBL database.

KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:4201241..5347428 (-)A.thalianaChr1:26266609..26939106 (+)87
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:4201241..5223016 (+)B.rapaA09:19597984..20394745 (+)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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