Basic Information
Gene Model:Bol015997
Gene Family:Not classificated
Chromosome:C07
Scaffold:Scaffold000159
Sequence:
 | 
Gene Structure
Nucleotide Length:1686 bp
Transcript Length:732 bp
Protein Length:243 aa
Strand:+
Location:C07: 3983267 : 3984952
Gene CDSs(6): 1-119 | 201-350 | 774-866 | 1075-1185 | 1268-1378 | 1539-1686 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF53271PRTase-like 64 237 1.8e-59Not foundNot found
Segsegseg 14 19 NANot foundNot found
HMMPfamPF00156Pribosyltran 94 218 5.9e-44IPR000836Phosphoribosyltransferase
HMMTigrTIGR01090apt: adenine phospho 73 240 8.4e-86IPR005764Adenine phosphoribosyl transferase
HAMAPMF_00004APT_MF_00004 71 240 33.050IPR005764Adenine phosphoribosyl transferase
Gene3DG3DSA:3.40.50.2020no description 64 237 2e-59Not foundNot found
HMMPantherPTHR10210:SF3RIBOSE-PHOSPHATE PYR 181 217 3.6e-05Not foundNot found
HMMPantherPTHR10210RIBOSE-PHOSPHATE PYR 181 217 3.6e-05Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003999 Molecular Function adenine phosphoribosyltransferase activity
GO:0006168 Biological Process adenine salvage
GO:0009116 Biological Process nucleoside metabolic process
Swiss-Prot
Best HitE_value Description
P311661e-101APT1_ARATH Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2
TrEMBL
Best HitE_value Description
Q7XJC23e-99Q7XJC2_BRANA Adenine phosphoribosyltransferase (Fragment) OS=Brassica napus PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT1G274501e-101K00759E2.4.2.7, aptadenine phosphoribosyltransferase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7264(9 genes,8 taxa):Arabidopsis thalianaAT1G27450.1
ORTHOMCL7264(9 genes,8 taxa):Brassica oleraceaBol015997
ORTHOMCL7264(9 genes,8 taxa):Brassica rapaBra010937
ORTHOMCL7264(9 genes,8 taxa):Vitis viniferaGSVIVT01009358001
ORTHOMCL7264(9 genes,8 taxa):Oryza sativaOs12t0589100-01
ORTHOMCL7264(9 genes,8 taxa):Populus trichocarpaPOPTR_0014s01740.1
ORTHOMCL7264(9 genes,8 taxa):Populus trichocarpaPOPTR_0014s01740.2
ORTHOMCL7264(9 genes,8 taxa):Sorghum bicolorSb08g019790.1
ORTHOMCL7264(9 genes,8 taxa):Carica papayaevm.TU.supercontig_249.4
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:3932374..4248630 (+)A.thalianaChr1:9481532..9626004 (+)21
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC07:3929977..4248630 (+)B.rapaA08:7933460..8045821 (-)23
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G2745095318399534114Chr1Subgenome_II16
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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