Basic Information
Gene Model:Bol015896
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000160
Sequence:
 | 
Gene Structure
Nucleotide Length:2274 bp
Transcript Length:1041 bp
Protein Length:346 aa
Strand:+
Location:C03: 30447513 : 30449786
Gene CDSs(7): 1-148 | 239-390 | 490-648 | 931-1153 | 1248-1364 | 1925-1987 | 2096-2274 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
superfamilySSF103481Multidrug resistance 210 321 4.4e-09Not foundNot found
superfamilySSF103481Multidrug resistance 42 149 1.6e-06Not foundNot found
Segsegseg 293 309 NANot foundNot found
Segsegseg 140 159 NANot foundNot found
Segsegseg 92 112 NANot foundNot found
HMMPfamPF00892DUF6 185 314 1.1e-10IPR000620Protein of unknown function DUF6, transmembrane
HMMPfamPF00892DUF6 17 142 1.3e-10IPR000620Protein of unknown function DUF6, transmembrane
Gene Ontology
GO TermGO TypeDescription
GO:0016020 Cellular Component membrane
Swiss-Prot
Best HitE_value Description
Q6J1638e-485NG4_PINTA Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1
TrEMBL
Best HitE_value Description
Q9FGG31e-161Q9FGG3_ARATH Nodulin-like protein OS=Arabidopsis thaliana GN=At5g64700 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:30313178..31049419 (-)A.thalianaChr5:2892365..3107829 (+)19
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:29404190..30958019 (+)B.rapaA09:9070132..9539186 (-)33
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
XAT5G647002586517225866927Chr5Subgenome_III(LF)87
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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