Basic Information
Gene Model:Bol015803
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000161_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:2101 bp
Transcript Length:1398 bp
Protein Length:465 aa
Strand:-
Location:C01: 35509870 : 35511970
Gene CDSs(10): 1-45 | 123-368 | 439-506 | 573-601 | 673-869 | 937-1149 | 1226-1360 | 1447-1563 | 1655-1708 | 1808-2101 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF01699Na_Ca_ex 297 456 9.2e-34IPR004837Sodium/calcium exchanger membrane region
HMMPfamPF01699Na_Ca_ex 106 253 1.1e-27IPR004837Sodium/calcium exchanger membrane region
HMMTigrTIGR00846caca2: calcium/proto 61 457 3e-135IPR004713Calcium/proton exchanger
HMMTigrTIGR00378cax: calcium/proton 80 457 5.6e-98IPR004798Calcium/proton exchanger superfamily
Gene Ontology
GO TermGO TypeDescription
GO:0006812 Biological Process cation transport
GO:0008324 Molecular Function cation transmembrane transporter activity
GO:0016021 Cellular Component integral to membrane
GO:0055085 Biological Process transmembrane transport
Swiss-Prot
Best HitE_value Description
Q392540.0CAX2_ARATH Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2
TrEMBL
Best HitE_value Description
B9DHD00.0B9DHD0_ARATH AT1G55730 protein OS=Arabidopsis thaliana GN=At1g55730 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT3G133200.0K07300chaACa2+:H+ antiporter
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL993(20 genes,8 taxa):Arabidopsis thalianaAT1G55720.1
ORTHOMCL993(20 genes,8 taxa):Arabidopsis thalianaAT1G55730.1
ORTHOMCL993(20 genes,8 taxa):Brassica oleraceaBol013325
ORTHOMCL993(20 genes,8 taxa):Brassica oleraceaBol015803
ORTHOMCL993(20 genes,8 taxa):Brassica oleraceaBol035229
ORTHOMCL993(20 genes,8 taxa):Brassica oleraceaBol035523
ORTHOMCL993(20 genes,8 taxa):Brassica oleraceaBol040372
ORTHOMCL993(20 genes,8 taxa):Brassica rapaBra001499
ORTHOMCL993(20 genes,8 taxa):Brassica rapaBra030840
ORTHOMCL993(20 genes,8 taxa):Brassica rapaBra034690
ORTHOMCL993(20 genes,8 taxa):Brassica rapaBra039385
ORTHOMCL993(20 genes,8 taxa):Vitis viniferaGSVIVT01014774001
ORTHOMCL993(20 genes,8 taxa):Vitis viniferaGSVIVT01016118001
ORTHOMCL993(20 genes,8 taxa):Oryza sativaOs03t0397400-01
ORTHOMCL993(20 genes,8 taxa):Oryza sativaOs04t0653200-01
ORTHOMCL993(20 genes,8 taxa):Populus trichocarpaPOPTR_0001s47380.1
ORTHOMCL993(20 genes,8 taxa):Populus trichocarpaPOPTR_0011s16970.1
ORTHOMCL993(20 genes,8 taxa):Sorghum bicolorSb01g033220.1
ORTHOMCL993(20 genes,8 taxa):Sorghum bicolorSb06g031080.1
ORTHOMCL993(20 genes,8 taxa):Carica papayaevm.TU.supercontig_12.94
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:34734589..37387064 (-)A.thalianaChr3:3092023..4731803 (+)219
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:34734589..35520786 (+)B.rapaA08:18329323..18868352 (-)15
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1332043145294318351Chr3Subgenome_I279
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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