Basic Information
Gene Model:Bol015793
Gene Family:Not classificated
Chromosome:C01
Scaffold:Scaffold000161_P2
Sequence:
 | 
Gene Structure
Nucleotide Length:3142 bp
Transcript Length:2046 bp
Protein Length:681 aa
Strand:+
Location:C01: 35567301 : 35570442
Gene CDSs(9): 1-270 | 352-459 | 526-810 | 888-1172 | 1250-1531 | 2079-2262 | 2354-2509 | 2585-2862 | 2945-3142 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Segsegseg 433 446 NANot foundNot found
Segsegseg 416 425 NANot foundNot found
Segsegseg 218 228 NANot foundNot found
superfamilySSF52540P-loop containing nu 65 314 8.8e-51Not foundNot found
PatternScanPS00012PHOSPHOPANTETHEINE 252 267 NAIPR006162Phosphopantetheine attachment site
ProfileScanPS50893ABC_TRANSPORTER_2 65 325 20.515IPR003439ABC transporter-like
HMMPantherPTHR19241:SF23ATP-BINDING CASSETTE 1 678 0Not foundNot found
HMMPantherPTHR19241ATP-BINDING CASSETTE 1 678 0Not foundNot found
Gene3DG3DSA:3.40.50.300no description 50 357 1.7e-40Not foundNot found
HMMPfamPF00005ABC_tran 113 301 3e-41IPR003439ABC transporter-like
HMMPfamPF01061ABC2_membrane 410 619 8.4e-49IPR013525ABC-2 type transporter
HMMSmartSM00382no description 112 302 4e-12IPR003593ATPase, AAA+ type, core
Gene Ontology
GO TermGO TypeDescription
GO:0000166 Molecular Function nucleotide binding
GO:0005524 Molecular Function ATP binding
GO:0016020 Cellular Component membrane
GO:0016887 Molecular Function ATPase activity
GO:0017111 Molecular Function nucleoside-triphosphatase activity
GO:0031177 Molecular Function phosphopantetheine binding
Swiss-Prot
Best HitE_value Description
Q9LK500.0AB26G_ARATH ABC transporter G family member 26 OS=Arabidopsis thaliana GN=ABCG26 PE=3 SV=1
TrEMBL
Best HitE_value Description
B9S9X80.0B9S9X8_RICCO ATP-binding cassette transporter, putative OS=Ricinus communis GN=RCOM_0523320 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
cme:CMS467C2e-84K05681ABCG2ATP-binding cassette, subfamily G (WHITE), member 2
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL7857(9 genes,8 taxa):Arabidopsis thalianaAT3G13220.1
ORTHOMCL7857(9 genes,8 taxa):Brassica oleraceaBol015793
ORTHOMCL7857(9 genes,8 taxa):Brassica rapaBra039378
ORTHOMCL7857(9 genes,8 taxa):Vitis viniferaGSVIVT01014733001
ORTHOMCL7857(9 genes,8 taxa):Oryza sativaOs06t0607700-01
ORTHOMCL7857(9 genes,8 taxa):Populus trichocarpaPOPTR_0001s37950.1
ORTHOMCL7857(9 genes,8 taxa):Sorghum bicolorSb10g023740.1
ORTHOMCL7857(9 genes,8 taxa):Sorghum bicolorSb10g023750.1
ORTHOMCL7857(9 genes,8 taxa):Carica papayaevm.TU.supercontig_12.138
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:34734589..37387064 (-)A.thalianaChr3:3092023..4731803 (+)219
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC01:34734589..35643515 (+)B.rapaA06:3801..446366 (+)17
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
FAT3G1322042479684250703Chr3Subgenome_I279
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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