Basic Information
Gene Model:Bol015751
Gene Family:Not classificated
Chromosome:Cun
Scaffold:Scaffold000161_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:1418 bp
Transcript Length:738 bp
Protein Length:245 aa
Strand:+
Location:Scaffold000161_P1: 567371 : 568788
Gene CDSs(7): 1-54 | 130-247 | 511-620 | 697-884 | 989-1079 | 1162-1227 | 1308-1418 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
Coilcoilcoiled-coil 191 212 NANot foundNot found
HMMSmartSM00397no description 148 215 1.5e-06IPR000727Target SNARE coiled-coil region
ProfileScanPS50192T_SNARE 153 215 12.453IPR000727Target SNARE coiled-coil region
Gene3DG3DSA:1.20.5.110no description 153 217 1.3e-07Not foundNot found
Segsegseg 230 244 NANot foundNot found
Segsegseg 208 227 NANot foundNot found
Segsegseg 132 143 NANot foundNot found
HMMPfamPF05739SNARE 158 220 1.1e-13IPR000727Target SNARE coiled-coil region
HMMPfamPF09177Syntaxin-6_N 6 99 2.1e-42IPR015260Syntaxin 6, N-terminal
PatternScanPS00914SYNTAXIN 159 198 NAIPR006012Syntaxin/epimorphin, conserved site
HMMPantherPTHR12380SYNTAXIN 5 245 1.5e-45Not foundNot found
HMMPantherPTHR12380:SF10SYNTAXIN 6 5 245 1.5e-45Not foundNot found
superfamilySSF47661t-snare proteins 5 102 7.9e-29IPR010989t-SNARE
Gene Ontology
GO TermGO TypeDescription
GO:0005484 Molecular Function SNAP receptor activity
GO:0005515 Molecular Function protein binding
GO:0006886 Biological Process intracellular protein transport
GO:0016020 Cellular Component membrane
GO:0016192 Biological Process vesicle-mediated transport
GO:0048193 Biological Process Golgi vesicle transport
Swiss-Prot
Best HitE_value Description
Q946Y71e-128SYP61_ARATH Syntaxin-61 OS=Arabidopsis thaliana GN=SYP61 PE=1 SV=1
TrEMBL
Best HitE_value Description
A5BHU91e-100A5BHU9_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_034578 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5860611e-101K08498STX6syntaxin 6
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL4445(11 genes,8 taxa):Arabidopsis thalianaAT1G28490.1
ORTHOMCL4445(11 genes,8 taxa):Brassica oleraceaBol008391
ORTHOMCL4445(11 genes,8 taxa):Brassica oleraceaBol015751
ORTHOMCL4445(11 genes,8 taxa):Brassica rapaBra010866
ORTHOMCL4445(11 genes,8 taxa):Brassica rapaBra032912
ORTHOMCL4445(11 genes,8 taxa):Vitis viniferaGSVIVT01038187001
ORTHOMCL4445(11 genes,8 taxa):Oryza sativaOs01t0963300-01
ORTHOMCL4445(11 genes,8 taxa):Populus trichocarpaPOPTR_0004s05020.1
ORTHOMCL4445(11 genes,8 taxa):Populus trichocarpaPOPTR_0011s05870.1
ORTHOMCL4445(11 genes,8 taxa):Sorghum bicolorSb03g046820.1
ORTHOMCL4445(11 genes,8 taxa):Carica papayaevm.TU.supercontig_7.6
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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