Basic Information
Gene Model:Bol015728
Gene Family:Transcription Factor Families
Chromosome:Cun
Scaffold:Scaffold000161_P1
Sequence:
 | 
Gene Structure
Nucleotide Length:3677 bp
Transcript Length:1080 bp
Protein Length:359 aa
Strand:-
Location:Scaffold000161_P1: 203339 : 207015
Gene CDSs(6): 1-318 | 1559-1632 | 1727-1773 | 1965-2065 | 3055-3129 | 3213-3677 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
ProfileScanPS50863B3 161 262 9.375IPR003340Transcriptional factor B3
Segsegseg 155 166 NANot foundNot found
Segsegseg 109 121 NANot foundNot found
HMMPfamPF02362B3 160 264 3.1e-23IPR003340Transcriptional factor B3
Gene3DG3DSA:2.40.330.10no description 148 276 1.5e-26Not foundNot found
Gene Ontology
GO TermGO TypeDescription
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
Swiss-Prot
Best HitE_value Description
Q1PFR71e-125LEC2_ARATH B3 domain-containing transcription factor LEC2 OS=Arabidopsis thaliana GN=LEC2 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9RBC53e-44B9RBC5_RICCO Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1674130 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5666672e-07K09287RAVRAV-like factor
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL24785(2 genes,2 taxa):Brassica oleraceaBol015728
ORTHOMCL24785(2 genes,2 taxa):Brassica rapaBra032890
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Note: This gene was not anchored on pseudo-chromosomes.
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to A.thaliana genome.

SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise

Note: this gene was not anchored on syntenic regions compared to B.rapa genome.

Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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