Basic Information
Gene Model:Bol015697
Gene Family:Not classificated
Chromosome:C06
Scaffold:Scaffold000162
Sequence:
 | 
Gene Structure
Nucleotide Length:925 bp
Transcript Length:768 bp
Protein Length:255 aa
Strand:-
Location:C06: 14838799 : 14839723
Gene CDSs(3): 1-39 | 119-358 | 437-925 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR13832PROTEIN PHOSPHATASE 10 237 1.9e-81IPR015655Protein phosphatase 2C
HMMPfamPF00481PP2C 35 237 8.3e-42IPR014045Protein phosphatase 2C, N-terminal
Segsegseg 22 31 NANot foundNot found
HMMSmartSM00332no description 26 243 1.2e-50IPR001932Protein phosphatase 2C-related
superfamilySSF81606Protein serine/threo 13 237 1e-51IPR001932Protein phosphatase 2C-related
Gene3DG3DSA:3.60.40.10no description 12 237 8.3e-49IPR001932Protein phosphatase 2C-related
Gene Ontology
GO TermGO TypeDescription
GO:0003824 Molecular Function catalytic activity
Swiss-Prot
Best HitE_value Description
Q9S9Z71e-125P2C10_ARATH Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1
TrEMBL
Best HitE_value Description
B9H7301e-103B9H730_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1078275 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
tca:6562103e-26K01090E3.1.3.16protein phosphatase
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL1960(15 genes,7 taxa):Arabidopsis thalianaAT1G22280.1
ORTHOMCL1960(15 genes,7 taxa):Arabidopsis thalianaAT1G34750.1
ORTHOMCL1960(15 genes,7 taxa):Brassica oleraceaBol012628
ORTHOMCL1960(15 genes,7 taxa):Brassica oleraceaBol015697
ORTHOMCL1960(15 genes,7 taxa):Brassica oleraceaBol031987
ORTHOMCL1960(15 genes,7 taxa):Brassica rapaBra016383
ORTHOMCL1960(15 genes,7 taxa):Brassica rapaBra028065
ORTHOMCL1960(15 genes,7 taxa):Brassica rapaBra034432
ORTHOMCL1960(15 genes,7 taxa):Vitis viniferaGSVIVT01009035001
ORTHOMCL1960(15 genes,7 taxa):Oryza sativaOs04t0452000-01
ORTHOMCL1960(15 genes,7 taxa):Populus trichocarpaPOPTR_0002s09750.1
ORTHOMCL1960(15 genes,7 taxa):Populus trichocarpaPOPTR_0002s09750.2
ORTHOMCL1960(15 genes,7 taxa):Populus trichocarpaPOPTR_0002s09750.3
ORTHOMCL1960(15 genes,7 taxa):Populus trichocarpaPOPTR_0005s17110.1
ORTHOMCL1960(15 genes,7 taxa):Sorghum bicolorSb06g029460.1
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:14781659..15508177 (-)A.thalianaChr1:12417176..12765638 (+)22
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC06:13785972..15436041 (+)B.rapaA04:16755409..17450133 (-)26
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
BAT1G347501273609212738196Chr1Subgenome_III(LF)22
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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