Basic Information
Gene Model:Bol015565
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000164
Sequence:
 | 
Gene Structure
Nucleotide Length:1595 bp
Transcript Length:600 bp
Protein Length:199 aa
Strand:-
Location:C02: 8778421 : 8780015
Gene CDSs(6): 1-51 | 310-396 | 607-672 | 900-1004 | 1095-1192 | 1403-1595 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00957Synaptobrevin 102 189 1.7e-13IPR001388Synaptobrevin
Gene3DG3DSA:3.30.450.50no description 1 139 1.8e-45IPR010908Longin
ProfileScanPS50892V_SNARE 139 199 15.045IPR001388Synaptobrevin
ProfileScanPS50859LONGIN 7 123 22.256IPR010908Longin
HMMPantherPTHR21136SNARE PROTEINS 20 196 1.6e-98Not foundNot found
HMMPantherPTHR21136:SF5SNARE PROTEIN YKT6 20 196 1.6e-98Not foundNot found
PatternScanPS00417SYNAPTOBREVIN 157 176 NAIPR001388Synaptobrevin
superfamilySSF64356SNARE-like 1 139 3.7e-45IPR011012Longin-like
Gene Ontology
GO TermGO TypeDescription
GO:0006810 Biological Process transport
GO:0016021 Cellular Component integral to membrane
GO:0016192 Biological Process vesicle-mediated transport
Swiss-Prot
Best HitE_value Description
Q9ZRD61e-111YKT61_ARATH VAMP-like protein YKT61 OS=Arabidopsis thaliana GN=YKT61 PE=2 SV=1
TrEMBL
Best HitE_value Description
B9HAR11e-104B9HAR1_POPTR Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_561300 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pop:POPTR_5613001e-105K08516YKT6synaptobrevin homolog YKT6
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL3363(13 genes,8 taxa):Arabidopsis thalianaAT5G58060.2
ORTHOMCL3363(13 genes,8 taxa):Brassica oleraceaBol015565
ORTHOMCL3363(13 genes,8 taxa):Brassica oleraceaBol016946
ORTHOMCL3363(13 genes,8 taxa):Brassica rapaBra002675
ORTHOMCL3363(13 genes,8 taxa):Brassica rapaBra020394
ORTHOMCL3363(13 genes,8 taxa):Vitis viniferaGSVIVT01003730001
ORTHOMCL3363(13 genes,8 taxa):Oryza sativaOs01t0866300-01
ORTHOMCL3363(13 genes,8 taxa):Oryza sativaOs01t0866300-02
ORTHOMCL3363(13 genes,8 taxa):Populus trichocarpaPOPTR_0006s20190.1
ORTHOMCL3363(13 genes,8 taxa):Populus trichocarpaPOPTR_0018s11900.1
ORTHOMCL3363(13 genes,8 taxa):Sorghum bicolorSb03g040890.1
ORTHOMCL3363(13 genes,8 taxa):Carica papayaevm.TU.supercontig_43.115
ORTHOMCL3363(13 genes,8 taxa):Carica papayaevm.TU.supercontig_46.123
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:8277827..10089401 (-)A.thalianaChr5:22972989..23830437 (+)105
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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