Basic Information
Gene Model:Bol015562
Gene Family:Transcription Factor Families
Chromosome:C02
Scaffold:Scaffold000164
Sequence:
 | 
Gene Structure
Nucleotide Length:2553 bp
Transcript Length:1881 bp
Protein Length:626 aa
Strand:+
Location:C02: 8749239 : 8751791
Gene CDSs(6): 1-139 | 223-372 | 454-840 | 933-1009 | 1328-2407 | 2506-2553 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPfamPF00249Myb_DNA-binding 204 254 4.9e-13IPR014778Myb, DNA-binding
HMMPfamPF00072Response_reg 23 133 3.2e-22IPR001789Signal transduction response regulator, receiver region
Segsegseg 318 329 NANot foundNot found
Segsegseg 293 310 NANot foundNot found
Segsegseg 172 198 NANot foundNot found
Segsegseg 32 44 NANot foundNot found
Gene3DG3DSA:1.10.10.60no description 198 261 1.1e-23IPR012287Homeodomain-related
Gene3DG3DSA:3.40.50.2300no description 21 137 2.7e-25Not foundNot found
ProfileScanPS51294HTH_MYB 199 258 13.888IPR017930Myb-type HTH DNA-binding domain
ProfileScanPS50110RESPONSE_REGULATORY 22 136 30.835IPR001789Signal transduction response regulator, receiver region
HMMPantherPTHR23283SENSOR HISTIDINE KIN 2 129 7.7e-15Not foundNot found
HMMPantherPTHR23283:SF21TWO-COMPONENT SYSTEM 2 129 7.7e-15Not foundNot found
HMMTigrTIGR01557myb_SHAQKYF: myb-lik 202 257 6.3e-32IPR006447Myb-like DNA-binding region, SHAQKYF class
HMMSmartSM00448no description 21 132 9.1e-27IPR001789Signal transduction response regulator, receiver region
HMMPIRPIRSF036392Response regulator, 1 626 1.1e-191IPR017053Response regulator, plant B-type
superfamilySSF46689Homeodomain-like 198 261 9.7e-21IPR009057Homeodomain-like
superfamilySSF52172CheY-like 18 137 6.1e-31IPR011006CheY-like
Gene Ontology
GO TermGO TypeDescription
GO:0000156 Molecular Function two-component response regulator activity
GO:0000160 Biological Process two-component signal transduction system (phosphorelay)
GO:0003677 Molecular Function DNA binding
GO:0006355 Biological Process regulation of transcription, DNA-dependent
GO:0045449 Biological Process regulation of transcription
Swiss-Prot
Best HitE_value Description
Q9FGT70.0ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana GN=ARR18 PE=2 SV=2
TrEMBL
Best HitE_value Description
B9SBZ11e-103B9SBZ1_RICCO Two-component system sensor histidine kinase/response regulator, putative OS=Ricinus communis GN=RCOM_0700880 PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
ath:AT5G580800.0K14491ARR-Btwo-component response regulator ARR-B family
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19531(3 genes,3 taxa):Arabidopsis thalianaAT5G58080.1
ORTHOMCL19531(3 genes,3 taxa):Brassica oleraceaBol015562
ORTHOMCL19531(3 genes,3 taxa):Brassica rapaBra020390
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:8277827..10089401 (-)A.thalianaChr5:22972989..23830437 (+)105
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
WAT5G580802350178523504143Chr5Subgenome_I221
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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