Basic Information
Gene Model:Bol015518
Gene Family:Not classificated
Chromosome:C02
Scaffold:Scaffold000164
Sequence:
 | 
Gene Structure
Nucleotide Length:2870 bp
Transcript Length:2142 bp
Protein Length:713 aa
Strand:-
Location:C02: 8375708 : 8378577
Gene CDSs(9): 1-551 | 654-870 | 949-1060 | 1145-1377 | 1467-1953 | 2039-2291 | 2367-2458 | 2580-2674 | 2769-2870 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
PatternScanPS00138SUBTILASE_SER 496 506 NAIPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Segsegseg 8 24 NANot foundNot found
Segsegseg 158 169 NANot foundNot found
HMMPfamPF00082Peptidase_S8 196 521 7.5e-10IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPfamPF05922Inhibitor_I9 34 113 6.3e-18IPR010259Proteinase inhibitor I9, subtilisin propeptide
Gene3DG3DSA:3.40.50.200no description 137 560 2.1e-67IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
HMMPantherPTHR10795:SF17SUBTILISIN-LIKE PROT 32 709 0Not foundNot found
HMMPantherPTHR10795SUBTILISIN/KEXIN-REL 32 709 0IPR015500Peptidase S8, subtilisin-related
superfamilySSF52743Subtilisin-like 95 566 1.2e-67IPR000209Peptidase S8/S53, subtilisin/kexin/sedolisin
Gene Ontology
GO TermGO TypeDescription
GO:0004252 Molecular Function serine-type endopeptidase activity
GO:0006508 Biological Process proteolysis
GO:0042802 Molecular Function identical protein binding
GO:0043086 Biological Process negative regulation of catalytic activity
Swiss-Prot
Best HitE_value Description
Q395471e-168CUCM1_CUCME Cucumisin OS=Cucumis melo PE=1 SV=1
TrEMBL
Best HitE_value Description
Q9FIM60.0Q9FIM6_ARATH Subtilisin-like serine protease OS=Arabidopsis thaliana PE=4 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT3G46840.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT3G46850.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT4G00230.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT4G15040.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G03620.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58820.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58830.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G58840.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59090.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59100.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59120.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59130.1
ORTHOMCL33(106 genes,7 taxa):Arabidopsis thalianaAT5G59190.1
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol001689
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol003856
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol005450
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol011526
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015497
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015517
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015518
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015519
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol015521
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol016817
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol016822
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol019553
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol025945
ORTHOMCL33(106 genes,7 taxa):Brassica oleraceaBol040476
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra002586
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra002592
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra006728
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra006729
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra018188
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020333
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020347
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020348
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020349
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020350
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra020351
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra024883
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra024884
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra036923
ORTHOMCL33(106 genes,7 taxa):Brassica rapaBra037326
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01010668001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01010670001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016439001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016442001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016443001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016445001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016446001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016447001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016448001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016449001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016451001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016452001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016455001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01016456001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018437001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018438001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01018442001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01019877001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024856001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024857001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024859001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01024948001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027583001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027584001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01027585001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01033810001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01037483001
ORTHOMCL33(106 genes,7 taxa):Vitis viniferaGSVIVT01037485001
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0002s15330.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0003s12010.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0006s11540.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s04280.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s04290.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0009s14800.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20390.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20400.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20420.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0010s20430.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0012s13960.1
ORTHOMCL33(106 genes,7 taxa):Populus trichocarpaPOPTR_0014s07050.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005460.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005470.1
ORTHOMCL33(106 genes,7 taxa):Sorghum bicolorSb02g005530.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.contig_38276.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_18.160
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_18.161
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_1887.2
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_4.194
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_4.195
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.1
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.5
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_413.6
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_5.46
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.57
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.58
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.70
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.71
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.73
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.74
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.76
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.77
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.79
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.80
ORTHOMCL33(106 genes,7 taxa):Carica papayaevm.TU.supercontig_81.83
Tandem Duplication
ClusterGene Num.Gene List
Cluster_1064Bol015517 Bol015518 Bol015519 Bol015521 
Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:8277827..10089401 (-)A.thalianaChr5:22972989..23830437 (+)105
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC02:4322905..10141266 (+)B.rapaA10:6145708..10195845 (+)263
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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