Basic Information
Gene Model:Bol015443
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000165
Sequence:
 | 
Gene Structure
Nucleotide Length:1139 bp
Transcript Length:960 bp
Protein Length:319 aa
Strand:+
Location:C03: 1021600 : 1022738
Gene CDSs(3): 1-726 | 814-877 | 970-1139 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR19432SUGAR TRANSPORTER 6 315 2.2e-119Not foundNot found
HMMPantherPTHR19432:SF2SUCROSE TRANSPORT 6 315 2.2e-119Not foundNot found
Segsegseg 299 317 NANot foundNot found
Segsegseg 54 69 NANot foundNot found
superfamilySSF103473MFS general substrat 6 319 2.2e-10IPR016196Major facilitator superfamily, general substrate transporter
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6A3291e-143SUC6_ARATH Putative sucrose transport protein SUC6 OS=Arabidopsis thaliana GN=SUC6 PE=5 SV=2
TrEMBL
Best HitE_value Description
Q8VYX41e-146Q8VYX4_BRAOL Sucrose transporter SUC1 OS=Brassica oleracea GN=SUC1 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description

Note: this gene was not detected its best hit in KEGG database.

Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List

Note: the orthologous genes of this gene was not detected by OrthoMCL software with default parameters.

Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:805..1974904 (+)A.thalianaChr5:386018..3364596 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:767150..1781501 (+)B.rapaA10:2400264..3680955 (+)76
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block

Note: this gene was no corresponding triplicated genes.

 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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