Basic Information
Gene Model:Bol015429
Gene Family:Not classificated
Chromosome:C03
Scaffold:Scaffold000165
Sequence:
 | 
Gene Structure
Nucleotide Length:1746 bp
Transcript Length:921 bp
Protein Length:306 aa
Strand:-
Location:C03: 938174 : 939919
Gene CDSs(4): 1-147 | 285-513 | 586-689 | 1306-1746 |
Protein Sequence Features
Interpro
DatabaseTermsIdentifierStartEndE-valueInterPro IDDescription
HMMPantherPTHR11132SOLUTE CARRIER FAMIL 6 306 3.1e-91Not foundNot found
superfamilySSF103481Multidrug resistance 46 150 4.3e-06Not foundNot found
superfamilySSF103481Multidrug resistance 193 306 6.2e-07Not foundNot found
HMMPfamPF03151TPT 156 300 7.3e-50IPR004853Protein of unknown function DUF250
Gene Ontology
GO TermGO TypeDescription

Note: this gene was not detected its best hit in Swiss-Prot database.

Swiss-Prot
Best HitE_value Description
Q6ICL76e-24S35E4_HUMAN Solute carrier family 35 member E4 OS=Homo sapiens GN=SLC35E4 PE=2 SV=1
TrEMBL
Best HitE_value Description
Q6DBP31e-160Q6DBP3_ARATH At5g05820 OS=Arabidopsis thaliana GN=At5g05820 PE=2 SV=1
KEGG
Best HitE_valueKOEC or Symbol Description
pon:1004475051e-12K08818CDC2Lcell division cycle 2-like
Gene Cluster
Orthologs
OrthoMCL GroupSpeciesGene List
ORTHOMCL19901(3 genes,3 taxa):Brassica oleraceaBol015429
ORTHOMCL19901(3 genes,3 taxa):Brassica rapaBra005868
ORTHOMCL19901(3 genes,3 taxa):Vitis viniferaGSVIVT01024817001
Tandem Duplication
ClusterGene Num.Gene List

The tandem genes of this gene was not detected with strict parameters, so there is no information collected in Bolbase.

Synteny Analysis
Synteny Genes
Compared to A.thaliana Compared to B.rapa
Synteny Regions
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:805..1974904 (+)A.thalianaChr5:386018..3364596 (+)286
SpeciesRegionMapped SpeciesMapped RegionNum. of Genewise
B.oleraceaC03:767150..1781501 (+)B.rapaA10:2400264..3680955 (+)76
Trplicated Block
BlockBest HitStartENDChromosomeSubgenomeNum. of Gene Pairs on Block
RAT5G0582017516881754178Chr5Subgenome_II626
 
@2012 Department of Genomics and Molecular Biology, Oil Crops Research Institute.


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